Trait
Short foot
A measured foot length that is more than 2 SD below the mean for a newborn of 27 - 41 weeks gestation, or foot that is less than the 3rd centile for individuals from birth to 16 years of age (objective). Alternatively, a foot that appears disproportionately short (subjective).
Summary
- Also called
- Short feet, Small feet, Hypoplastic feet
Reference genomeGRCh38hg38
Positions on gene and variant pages follow this choice, in this browser.
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Get my Genome Test158 genes linked to Short foot
Changes in these genes cause rare conditions in which Short foot is seen. Most people with this trait have none of those conditions, and a gene on this list says nothing about anyone's own genome.
| Gene | How often it is seen | Conditions |
|---|---|---|
| ARID2AT-rich interaction domain 2 | Always | In 1 condition |
| CAMK2Gcalcium/calmodulin dependent protein kinase II gamma | Always | In 1 condition |
| CCDC47coiled-coil domain containing 47 | Always | In 1 condition |
| CENPEcentromere protein E | Always | In 1 condition |
| DYNC1H1dynein cytoplasmic 1 heavy chain 1 | Always | In 1 condition |
| ERI1exoribonuclease 1 | Always | In 1 condition |
| FBN1fibrillin 1 | Always | In 3 conditions |
| GABBR2gamma-aminobutyric acid type B receptor subunit 2 | Always | In 2 conditions |
| HOXA13homeobox A13 | Always | In 1 condition |
| INPPL1inositol polyphosphate phosphatase like 1 | Always | In 1 condition |
| KDM5Clysine demethylase 5C | Always | In 1 condition |
| KDM6Blysine demethylase 6B | Always | In 1 condition |
| KIF5Ckinesin family member 5C | Always | In 1 condition |
| LRRC7leucine rich repeat containing 7 | Always | In 1 condition |
| MIR140microRNA 140 | Always | In 1 condition |
| NGLY1N-glycanase 1 | Always | In 1 condition |
| NIPBLNIPBL cohesin loading factor | Always | In 2 conditions |
| POC1APOC1 centriolar protein A | Always | In 1 condition |
| RMRPRNA component of mitochondrial RNA processing endoribonuclease | Always | In 1 condition |
| SLC35C1solute carrier family 35 member C1 | Always | In 1 condition |
| SMAD4SMAD family member 4 | Always | In 1 condition |
| SMC1Astructural maintenance of chromosomes 1A | Always | In 4 conditions |
| SPARTspartin | Always | In 1 condition |
| UBE2Aubiquitin conjugating enzyme E2 A | Always | In 2 conditions |
| WDR19WD repeat domain 19 | Always | In 2 conditions |
| B3GLCTbeta 3-glucosyltransferase | Very often (80–99%) | In 2 conditions |
| BMPR1Bbone morphogenetic protein receptor type 1B | Very often (80–99%) | In 3 conditions |
| BRD4bromodomain containing 4 | Very often (80–99%) | In 1 condition |
| CASZ1castor zinc finger 1 | Very often (80–99%) | In 1 condition |
| COL2A1collagen type II alpha 1 chain | Very often (80–99%) | In 2 conditions |
| DLK1delta like non-canonical Notch ligand 1 | Very often (80–99%) | In 3 conditions |
| DYNC2H1dynein cytoplasmic 2 heavy chain 1 | Very often (80–99%) | In 2 conditions |
| DYNC2I1dynein 2 intermediate chain 1 | Very often (80–99%) | In 2 conditions |
| DYNC2I2dynein 2 intermediate chain 2 | Very often (80–99%) | In 2 conditions |
| FGD1FYVE, RhoGEF and PH domain containing 1 | Very often (80–99%) | In 2 conditions |
| FMR1fragile X messenger ribonucleoprotein 1 | Very often (80–99%) | In 1 condition |
| GABRDgamma-aminobutyric acid type A receptor subunit delta | Very often (80–99%) | In 1 condition |
| GDF5growth differentiation factor 5 | Very often (80–99%) | In 5 conditions |
| GPC3glypican 3 | Very often (80–99%) | In 2 conditions |
| GPC4glypican 4 | Very often (80–99%) | In 1 condition |
Show 118 more genes
| Gene | How often it is seen | Conditions |
|---|---|---|
| HDAC6histone deacetylase 6 | Very often (80–99%) | In 1 condition |
| HDAC8histone deacetylase 8 | Very often (80–99%) | In 3 conditions |
| HERC2HECT and RLD domain containing E3 ubiquitin protein ligase 2 | Very often (80–99%) | In 1 condition |
| HSPG2heparan sulfate proteoglycan 2 | Very often (80–99%) | In 1 condition |
| IFT80intraflagellar transport 80 | Very often (80–99%) | In 3 conditions |
| IHHIndian hedgehog signaling molecule | Very often (80–99%) | In 1 condition |
| KCNAB2potassium voltage-gated channel subfamily A regulatory beta subunit 2 | Very often (80–99%) | In 1 condition |
| LAS1LLAS1 like ribosome biogenesis factor | Very often (80–99%) | In 2 conditions |
| LUZP1leucine zipper protein 1 | Very often (80–99%) | In 1 condition |
| MAGEL2MAGE family member L2 | Very often (80–99%) | In 7 conditions |
| MAU2MAU2 sister chromatid cohesion factor | Very often (80–99%) | In 2 conditions |
| MEG3maternally expressed 3 | Very often (80–99%) | In 3 conditions |
| MKRN3makorin ring finger protein 3 | Very often (80–99%) | In 1 condition |
| MMP23Bmatrix metallopeptidase 23B | Very often (80–99%) | In 1 condition |
| NOGnoggin | Very often (80–99%) | In 2 conditions |
| NPAP1nuclear pore associated protein 1 | Very often (80–99%) | In 1 condition |
| PDPNpodoplanin | Very often (80–99%) | In 1 condition |
| PPM1Dprotein phosphatase, Mg2+/Mn2+ dependent 1D | Very often (80–99%) | In 1 condition |
| PRDM16PR/SET domain 16 | Very often (80–99%) | In 1 condition |
| PRKCZprotein kinase C zeta | Very often (80–99%) | In 1 condition |
| PWAR1Prader Willi/Angelman region RNA 1 | Very often (80–99%) | In 1 condition |
| PWRN1Prader-Willi region non-protein coding RNA 1 | Very often (80–99%) | In 1 condition |
| RAD21RAD21 cohesin complex component | Very often (80–99%) | In 1 condition |
| REREarginine-glutamic acid dipeptide repeats | Very often (80–99%) | In 1 condition |
| RTL1retrotransposon Gag like 1 | Very often (80–99%) | In 3 conditions |
| SHOXSHOX homeobox | Very often (80–99%) | In 1 condition |
| SKISKI proto-oncogene | Very often (80–99%) | In 1 condition |
| SLC26A2solute carrier family 26 member 2 | Very often (80–99%) | In 1 condition |
| SMC3structural maintenance of chromosomes 3 | Very often (80–99%) | In 2 conditions |
| SNORD115-1small nucleolar RNA, C/D box 115-1 | Very often (80–99%) | In 1 condition |
| SNORD116-1small nucleolar RNA, C/D box 116-1 | Very often (80–99%) | In 1 condition |
| SPENspen family transcriptional repressor | Very often (80–99%) | In 1 condition |
| TBCEtubulin folding cofactor E | Very often (80–99%) | In 4 conditions |
| UBE4Bubiquitination factor E4B | Very often (80–99%) | In 1 condition |
| WDR35WD repeat domain 35 | Very often (80–99%) | In 1 condition |
| WNT7AWnt family member 7A | Very often (80–99%) | In 1 condition |
| ADAMTS2ADAM metallopeptidase with thrombospondin type 1 motif 2 | Often (30–79%) | In 1 condition |
| ADAMTSL2ADAMTS like 2 | Often (30–79%) | In 3 conditions |
| AHDC1AT-hook DNA binding motif containing 1 | Often (30–79%) | In 1 condition |
| BMP2bone morphogenetic protein 2 | Often (30–79%) | In 1 condition |
| CDKL5cyclin dependent kinase like 5 | Often (30–79%) | In 2 conditions |
| CEP120centrosomal protein 120 | Often (30–79%) | In 1 condition |
| CERT1ceramide transporter 1 | Often (30–79%) | In 1 condition |
| COL3A1collagen type III alpha 1 chain | Often (30–79%) | In 1 condition |
| CTSKcathepsin K | Often (30–79%) | In 1 condition |
| CUL4Bcullin 4B | Often (30–79%) | In 2 conditions |
| DYNC2LI1dynein cytoplasmic 2 light intermediate chain 1 | Often (30–79%) | In 1 condition |
| FGFR1fibroblast growth factor receptor 1 | Often (30–79%) | In 2 conditions |
| FGFR2fibroblast growth factor receptor 2 | Often (30–79%) | In 3 conditions |
| FGFR3fibroblast growth factor receptor 3 | Often (30–79%) | In 1 condition |
| H4C3H4 clustered histone 3 | Often (30–79%) | In 1 condition |
| HDAC4histone deacetylase 4 | Often (30–79%) | In 1 condition |
| HNRNPRheterogeneous nuclear ribonucleoprotein R | Often (30–79%) | In 1 condition |
| IFT140intraflagellar transport 140 | Often (30–79%) | In 1 condition |
| IFT172intraflagellar transport 172 | Often (30–79%) | In 1 condition |
| KIAA0753KIAA0753 | Often (30–79%) | In 1 condition |
| LTBP3latent transforming growth factor beta binding protein 3 | Often (30–79%) | In 2 conditions |
| MECP2methyl-CpG binding protein 2 | Often (30–79%) | In 3 conditions |
| NDNnecdin, MAGE family member | Often (30–79%) | In 4 conditions |
| NTNG1netrin G1 | Often (30–79%) | In 1 condition |
| OCA2OCA2 melanosomal transmembrane protein | Often (30–79%) | In 3 conditions |
| PIGLphosphatidylinositol glycan anchor biosynthesis class L | Often (30–79%) | In 1 condition |
| PIGNphosphatidylinositol glycan anchor biosynthesis class N | Often (30–79%) | In 1 condition |
| PTH1Rparathyroid hormone 1 receptor | Often (30–79%) | In 1 condition |
| RNF2ring finger protein 2 | Often (30–79%) | In 1 condition |
| SIM1SIM bHLH transcription factor 1 | Often (30–79%) | In 1 condition |
| SNRPNsmall nuclear ribonucleoprotein polypeptide N | Often (30–79%) | In 5 conditions |
| TRIP11thyroid hormone receptor interactor 11 | Often (30–79%) | In 1 condition |
| TTC21Btetratricopeptide repeat domain 21B | Often (30–79%) | In 1 condition |
| ASCC3activating signal cointegrator 1 complex subunit 3 | Sometimes (5–29%) | In 1 condition |
| CHD6chromodomain helicase DNA binding protein 6 | Sometimes (5–29%) | In 1 condition |
| CHSY1chondroitin sulfate synthase 1 | Sometimes (5–29%) | In 1 condition |
| CRELD1CRELD disulfide isomerase 1 | Sometimes (5–29%) | In 1 condition |
| DYRK1Adual specificity tyrosine phosphorylation regulated kinase 1A | Sometimes (5–29%) | In 1 condition |
| FBXL4F-box and leucine rich repeat protein 4 | Sometimes (5–29%) | In 1 condition |
| GTF3C3general transcription factor IIIC subunit 3 | Sometimes (5–29%) | In 1 condition |
| KCNJ2potassium inwardly rectifying channel subfamily J member 2 | Sometimes (5–29%) | In 2 conditions |
| KCNJ5potassium inwardly rectifying channel subfamily J member 5 | Sometimes (5–29%) | In 1 condition |
| KDM4Blysine demethylase 4B | Sometimes (5–29%) | In 1 condition |
| MSL3MSL complex subunit 3 | Sometimes (5–29%) | In 1 condition |
| PDGFRBplatelet derived growth factor receptor beta | Sometimes (5–29%) | In 1 condition |
| RNU4ATACRNA, U4atac small nuclear | Sometimes (5–29%) | In 1 condition |
| SATB1SATB homeobox 1 | Sometimes (5–29%) | In 1 condition |
| SATB2SATB homeobox 2 | Sometimes (5–29%) | In 2 conditions |
| SIN3ASIN3 transcription regulator family member A | Sometimes (5–29%) | In 1 condition |
| TELO2telomere maintenance 2 | Sometimes (5–29%) | In 1 condition |
| TONSLtonsoku like, DNA repair protein | Sometimes (5–29%) | In 1 condition |
| TUBB3tubulin beta 3 class III | Sometimes (5–29%) | In 1 condition |
| USP7ubiquitin specific peptidase 7 | Sometimes (5–29%) | In 1 condition |
| USP9Xubiquitin specific peptidase 9 X-linked | Sometimes (5–29%) | In 2 conditions |
| WDR26WD repeat domain 26 | Sometimes (5–29%) | In 1 condition |
| ZFXzinc finger protein X-linked | Sometimes (5–29%) | In 1 condition |
| ZMYM2zinc finger MYM-type containing 2 | Sometimes (5–29%) | In 1 condition |
| ARL6ARF like GTPase 6 | Not recorded | In 1 condition |
| BBS1Bardet-Biedl syndrome 1 | Not recorded | In 1 condition |
| BGNbiglycan | Not recorded | In 1 condition |
| BPNT23'(2'), 5'-bisphosphate nucleotidase 2 | Not recorded | In 1 condition |
| CCBE1collagen and calcium binding EGF domains 1 | Not recorded | In 1 condition |
| CCDC28Bcoiled-coil domain containing 28B | Not recorded | In 1 condition |
| COG1component of oligomeric golgi complex 1 | Not recorded | In 1 condition |
| COL11A1collagen type XI alpha 1 chain | Not recorded | In 1 condition |
| FAM50Afamily with sequence similarity 50 member A | Not recorded | In 1 condition |
| FBXO11F-box protein 11 | Not recorded | In 1 condition |
| GALNT2polypeptide N-acetylgalactosaminyltransferase 2 | Not recorded | In 1 condition |
| GJA1gap junction protein alpha 1 | Not recorded | In 1 condition |
| HTThuntingtin | Not recorded | In 1 condition |
| HUWE1HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 | Not recorded | In 1 condition |
| IGF1Rinsulin like growth factor 1 receptor | Not recorded | In 1 condition |
| LMBR1limb development membrane protein 1 | Not recorded | In 1 condition |
| MAP3K7mitogen-activated protein kinase kinase kinase 7 | Not recorded | In 1 condition |
| MASP1MBL associated serine protease 1 | Not recorded | In 1 condition |
| MBD5methyl-CpG binding domain protein 5 | Not recorded | In 1 condition |
| RECQL4RecQ like helicase 4 | Not recorded | In 1 condition |
| SONSON DNA and RNA binding protein | Not recorded | In 1 condition |
| TBL1XR1TBL1X/Y related 1 | Not recorded | In 1 condition |
| TRPS1transcriptional repressor GATA binding 1 | Not recorded | In 1 condition |
| TRRAPtransformation/transcription domain associated protein | Not recorded | In 1 condition |
| WDR81WD repeat domain 81 | Not recorded | In 1 condition |
How often is among people with one of the gene's conditions, the most often across them, as the Human Phenotype Ontology records it. These pages describe traits and the research behind them; they are not a diagnosis, and a doctor or genetic counsellor is the person to ask about symptoms.
Broader traits
Where this comes from
- The Human Phenotype Ontology, release 2026-09-01: the trait, its names, its definition and the genes linked to it. Find out more at hpo.jax.org.
- Data release 2026.10.16-c6eea6bf.
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