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Gene

ARID2

AT-rich interaction domain 2

Summary

Cytogenetic location
12q12
Coordinates
Chromosome 12: 45,729,706–45,908,037 (GRCh38)
Exons
21 exons across 178.3 kb
Protein
1,835 amino acids
Also known as
KIAA1557, DKFZp686G052, FLJ30619, BAF200, SMARCF3, ZIPZAP, p200
MANE Select transcript
ENST00000334344.11NM_152641.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads ARID2 yet. The test sequences your whole genome, so your data includes it all the same.

How ARID2 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 12, with a bracket where ARID2 sits. ARID2 and 3 genes near it on chromosome 12, from 45,318,872 to 46,318,871.Chromosome 1212q12p13.33p13.32p13.31p13.2p13.1p12.3p12.2p12.1p11.23p11.22p11.21p11.1q11q12q13.11q13.12q13.13q13.2q13.3q14.1q14.2q14.3q15q21.1q21.2q21.31q21.32q21.33q22q23.1q23.2q23.3q24.11q24.12q24.13q24.21q24.22q24.23q24.31q24.32q24.3345.4 Mb45.6 Mb45.8 Mb46 Mb46.2 MbANO6: 45,215,987–45,482,280, forward strandANO6ARID2: 45,729,706–45,908,037, forward strandARID2SCAF11: 45,919,131–45,992,120, reverse strandSCAF11SLC38A1: 46,183,054–46,270,070, reverse strandSLC38A1Diagram of ARID2: 21 exons on the forward strand of chromosome 12Exon 2: 4 known disease-causing sitesExon 4: 1 known disease-causing siteExon 5: 1 known disease-causing siteExon 8: 6 known disease-causing sitesExon 9: 1 known disease-causing siteExon 10: 1 known disease-causing siteExon 11: 2 known disease-causing sitesExon 12: 1 known disease-causing siteExon 14: 3 known disease-causing sitesExon 15: 36 known disease-causing sitesExon 17: 2 known disease-causing sitesExon 18: 1 known disease-causing siteExon 19: 1 known disease-causing siteExon 20: 1 known disease-causing siteExon 1: 45,729,706–45,729,928, 223 basesExon 2: 45,730,044–45,730,137, 94 basesExon 3: 45,731,217–45,731,314, 98 basesExon 4: 45,811,418–45,811,551, 134 basesExon 5: 45,817,670–45,817,888, 219 basesExon 6: 45,821,420–45,821,487, 68 basesExon 7: 45,836,589–45,836,655, 67 basesExon 8: 45,836,741–45,836,991, 251 basesExon 9: 45,837,321–45,837,417, 97 basesExon 10: 45,837,498–45,837,707, 210 basesExon 11: 45,839,329–45,839,496, 168 basesExon 12: 45,846,856–45,846,937, 82 basesExon 13: 45,848,836–45,848,970, 135 basesExon 14: 45,849,580–45,849,776, 197 basesExon 15: 45,850,036–45,852,896, 2,861 basesExon 16: 45,860,801–45,860,949, 149 basesExon 17: 45,891,780–45,891,918, 139 basesExon 18: 45,892,011–45,892,096, 86 basesExon 19: 45,893,420–45,893,543, 124 basesExon 20: 45,893,630–45,893,721, 92 basesExon 21: 45,904,934–45,908,037, 3,104 bases15101520215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 8.6 kb of the gene's 178.3 kb; 5,508 of those bases code for the protein.

How a genome test reads ARID2

66

positions in ARID2 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 178.3 kb of ARID2, introns included, not only the 8.6 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). ARID2 gene: AT-rich interaction domain 2. Retrieved 17 October 2026, from https://dantelabs.com/genes/arid2

Vancouver

Dante Labs. ARID2 gene: AT-rich interaction domain 2 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/arid2

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