Gene
PSAP
prosaposin
- HGNC 9498↗(opens in a new tab)
- Ensembl gene ENSG00000197746↗(opens in a new tab)
- NCBI Gene 5660↗(opens in a new tab)
Summary
- Cytogenetic location
- 10q22.1
- Coordinates
- Chromosome 10: 71,816,298–71,851,251 (GRCh38)
- Exons
- 14 exons across 35 kb
- Protein
- 524 amino acids
- Inheritance
- Autosomal recessive
- Previous symbols
- SAP1, GLBA, SAP2
- MANE Select transcript
- ENST00000394936.8NM_002778.4
- Locus type
- gene with protein product
- Very high
- Confident
- Low
- Very low
Reference genomeGRCh38hg38
Positions on gene and variant pages follow this choice, in this browser.
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Metachromatic Leukodystrophy
- Metachromatic leukodystrophy (ARSA and saposin B deficiency)Autosomal recessive
Loss of arylsulfatase A activity, or of its activator saposin B, causes progressive loss of motor and cognitive skills, with late infantile, juvenile and adult onset forms.
- ClinGen rates the link definitive
- 4 GenCC submitters rate it definitive or strong
What knowing changes
Gene therapy (atidarsagene autotemcel) or stem cell transplantation can help when given before or very early in the course of the disease, so early diagnosis matters.
Broader groupings
Other Inherited Leukodystrophies
- Leukodystrophy (other and unspecified types)
One of 80 genes linked to it
Inherited conditions that damage or prevent the normal formation of myelin, the white matter of the brain and spinal cord. Different types follow autosomal recessive, autosomal dominant or X-linked inheritance depending on the gene involved.
- ClinGen rates the link definitive
- 4 GenCC submitters rate it definitive or strong
What knowing changes
Knowing the specific genetic cause can end a diagnostic search, guide supportive care and surveillance, show whether a specific treatment exists, and allow testing of relatives.
Lysosomal Storage Disease
- Lysosomal storage disease (other and unspecified types)
One of 59 genes linked to it
Covers lysosomal storage diseases without a dedicated report, such as Farber disease and other ASAH1-related disorders, prosaposin (PSAP) deficiencies, multiple sulfatase deficiency, mucopolysaccharidosis types IX and X, and Dorfman-Chanarin disease; inheritance varies by subtype, most often autosomal recessive.
- ClinGen rates the link definitive
- 6 GenCC submitters rate it definitive or strong
Inheritance
- Autosomal recessive
- It takes a changed copy from each parent. With one, you are a carrier and usually unaffected; when both parents are carriers, each child has a one-in-four chance of inheriting two.
How PSAP is laid out
- Coding sequence
- Untranslated region
- Intron
- Direction of transcription
- Known disease-causing sites
- Stretches short reads find hard
Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.
Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).
Nearby genes from Ensembl release 116, on GRCh38.
Exons make up 2.7 kb of the gene's 35 kb; 1,575 of those bases code for the protein.
How a genome test reads PSAP
79
positions in PSAP where ClinVar classes a change as pathogenic or likely pathogenic
None of them falls in a region short reads find hard.
A whole genome covers all 35 kb of PSAP, introns included, not only the 2.7 kb of exons.
Genes linked to the same conditions
- ARSAarylsulfatase AShares 3 conditions
- CYP27A1cytochrome P450 family 27 subfamily A member 1Shares 2 conditions
- GALCgalactosylceramidaseShares 2 conditions
- AARS1alanyl-tRNA synthetase 1Shares 1 condition
- AARS2alanyl-tRNA synthetase 2, mitochondrialShares 1 condition
- ABCD1ATP binding cassette subfamily D member 1Shares 1 condition
- ABHD5abhydrolase domain containing 5, lysophosphatidic acid acyltransferaseShares 1 condition
- ACER3alkaline ceramidase 3Shares 1 condition
- ADARadenosine deaminase RNA specificShares 1 condition
- AGAaspartylglucosaminidaseShares 1 condition
- AIMP1aminoacyl tRNA synthetase complex interacting multifunctional protein 1Shares 1 condition
- AIMP2aminoacyl tRNA synthetase complex interacting multifunctional protein 2Shares 1 condition
Traits linked to PSAP
The Human Phenotype Ontology lists these as features of the rare conditions PSAP can cause. Each trait's page lists the other genes linked to it.
Abnormality of the nervous system
- Abducens palsy
- Bilateral tonic-clonic seizure with focal onset
- Cerebral dysmyelination
- Clonic seizure
- Decreased nerve conduction velocity
- Decreased reflex response
- Generalized brain degeneration
- Global developmental delay
Show 71 more traits
- Hyperactive movements
- Hyperintensity of cerebral white matter on MRI
- Increased reflexes
- Intention tremor
- Jerking
- Loss of ability to walk
- Loss of developmental milestones
- Parkinsonism with favorable response to dopaminergic medication
- Peripheral axonal neuropathy
- Peripheral demyelination
- Peripheral nerve disease
- Peripheral neuropathy
- Progressive degeneration of movement
- Repeated seizures without recovery between them
- Tonic seizure
- Vegetative state
- Ventriculomegaly
- Worsening neurological symptoms
- Dystonia
- Grand mal seizures
- Inappropriate crying
- Irritability
- Mental deterioration
- Nerve damage causing decreased feeling and movement
- Abnormal gait
- Abnormal periventricular white matter morphology
- Abnormal social behavior
- Can't control feelings
- Clumsiness
- Delayed brainstem auditory evoked response conduction time
- Delusions
- Dementia
- Depression
- Difficulty articulating speech
- Elevated brain choline level by MRS
- Epilepsy
- Hallucinations
- Inability to coordinate movements when walking
- Leukodystrophy
- Memory impairment
- Progressive gait ataxia
- Progressive peripheral neuropathy
- Psychomotor deterioration
- Punctate periventricular T2 hyperintense foci
- Reduced brain glutamate level by MRS
- Reduced brain N-acetyl aspartate level by MRS
- Resting tremor
- Short attention span
- Toe walking
- Ataxia
- Babinski sign
- Bulbar signs
- Chorea
- Diffuse cerebral atrophy
- EEG abnormality
- Encephalopathy
- Generalized myoclonic seizure
- Hyperesthesia
- Hypointensity of cerebral white matter on MRI
- Loss of speech
- Progressive psychomotor deterioration
- Rise in pressure inside skull
- Schizophrenia
- Too much cerebrospinal fluid in the brain
- Tremor
- CNS demyelination
- Generalized clonic seizure
- Increased cerebral lipofuscin
- Loss of brain cells
- Muscle twitch
- Underdevelopment of part of brain called corpus callosum
Abnormality of the musculoskeletal system
- Bone pain
- Low muscle tone
- Muscle weakness
- Spasticity and rigidity of muscles
- Functional motor deficit
- Involuntary muscle stiffness, contraction, or spasm
- EMG: chronic denervation signs
- Frequent falls
Show 16 more traits
Abnormality of the digestive system
- Enlarged liver
- Feeding difficulties
- Abdominal bloating
- Acid reflux
- Feeding difficulties in infancy
- Gallbladder inflammation
- Loss of bowel control
- Nasogastric tube feeding in infancy
Show 3 more traits
External links
Gene records
Transcript
Protein
Where this comes from
- HGNC: the gene's symbol, name, other symbols and location.
- MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
- GenCC and ClinGen, released 2026-10-16: which conditions the gene is linked to, and how strongly.
- The ACMG secondary findings list, SF v3.2.
- ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
- The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
- Data release 2026.10.16-c6eea6bf.
Cite this page
Dante Labs. (n.d.). PSAP gene: prosaposin. Retrieved 16 October 2026, from https://dantelabs.com/genes/psap
Dante Labs. PSAP gene: prosaposin [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/psap
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