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Gene

SALL1

spalt like transcription factor 1

Summary

Cytogenetic location
16q12.1
Coordinates
Chromosome 16: 51,135,982–51,151,270 (GRCh38)
Exons
3 exons across 15.3 kb
Protein
1,324 amino acids
Also known as
Hsal1, ZNF794
Previous symbols
TBS
MANE Select transcript
ENST00000251020.9NM_002968.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SALL1 yet. The test sequences your whole genome, so your data includes it all the same.

How SALL1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 16, with a bracket where SALL1 sits. SALL1 and 5 genes near it on chromosome 16, from 50,643,626 to 51,643,625.Chromosome 1616q12.1p13.3p13.2p13.13p13.12p13.11p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q13q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.350.8 Mb51 Mb51.2 Mb51.4 Mb51.6 MbNKD1: 50,548,312–50,649,249, forward strandNKD1SNX20: 50,666,300–50,681,743, reverse strandSNX20NOD2: 50,693,217–50,733,348, forward strandNOD2CYLD: 50,742,032–50,801,935, forward strandCYLDSALL1: 51,135,982–51,151,270, reverse strandSALL1HNRNPA1L3: 51,553,436–51,647,132, forward strandHNRNPA1L3Diagram of SALL1: 3 exons on the reverse strand of chromosome 16Exon 2: 78 known disease-causing sitesExon 3: 51,135,982–51,137,552, 1,571 basesExon 2: 51,138,688–51,142,145, 3,458 basesExon 1: 51,151,166–51,151,270, 105 bases3215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 5.1 kb of the gene's 15.3 kb; 3,975 of those bases code for the protein.

How a genome test reads SALL1

79

positions in SALL1 where ClinVar classes a change as pathogenic or likely pathogenic

78 of them (99%) fall in regions short reads find hard.

  • Segmental duplications (78 sites)Copies of at least 1 kb sharing at least 90% identity with another part of the genome (paralogues, pseudogenes); reads may align to the wrong copy.

A whole genome covers all 15.3 kb of SALL1, introns included, not only the 5.1 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). SALL1 gene: spalt like transcription factor 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/sall1

Vancouver

Dante Labs. SALL1 gene: spalt like transcription factor 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/sall1

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