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Gene

CSGALNACT1

chondroitin sulfate N-acetylgalactosaminyltransferase 1

Summary

Cytogenetic location
8p21.3
Coordinates
Chromosome 8: 19,404,161–19,757,277 (GRCh38)
Exons
9 exons across 353.1 kb
Protein
532 amino acids
Also known as
CSGalNAcT-1, FLJ11264, ChGn
MANE Select transcript
ENST00000692225.2NM_001354483.2
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads CSGALNACT1 yet. The test sequences your whole genome, so your data includes it all the same.

How CSGALNACT1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 8, with a bracket where CSGALNACT1 sits. CSGALNACT1 and 4 genes near it on chromosome 8, from 19,051,044 to 20,110,394.Chromosome 88p21.3p23.3p23.2p23.1p22p21.3p21.2p21.1p12p11.23p11.22p11.21p11.1q11.1q11.21q11.22q11.23q12.1q12.2q12.3q13.1q13.2q13.3q21.11q21.12q21.13q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.11q24.12q24.13q24.21q24.22q24.23q24.319.2 Mb19.4 Mb19.6 Mb19.8 Mb20 MbPSD3: 18,527,303–19,084,730, reverse strandPSD3SH2D4A: 19,313,312–19,406,660, forward strandSH2D4ACSGALNACT1: 19,404,161–19,757,277, reverse strandCSGALNACT1INTS10: 19,817,147–19,857,714, forward strandINTS10LPL: 19,901,717–19,967,653, forward strandLPLDiagram of CSGALNACT1: 9 exons on the reverse strand of chromosome 8Exon 8: 1 known disease-causing siteExon 7: 1 known disease-causing siteExon 5: 1 known disease-causing siteExon 4: 2 known disease-causing sitesExon 3: 1 known disease-causing siteExon 9: 19,404,161–19,406,069, 1,909 basesExon 8: 19,408,613–19,408,694, 82 basesExon 7: 19,418,656–19,418,750, 95 basesExon 6: 19,420,340–19,420,518, 179 basesExon 5: 19,439,830–19,439,931, 102 basesExon 4: 19,458,426–19,458,642, 217 basesExon 3: 19,505,201–19,506,130, 930 basesExon 2: 19,601,771–19,601,865, 95 basesExon 1: 19,757,186–19,757,277, 92 bases9515′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.7 kb of the gene's 353.1 kb; 1,599 of those bases code for the protein.

How a genome test reads CSGALNACT1

7

positions in CSGALNACT1 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 353.1 kb of CSGALNACT1, introns included, not only the 3.7 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). CSGALNACT1 gene: chondroitin sulfate N-acetylgalactosaminyltransferase 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/csgalnact1

Vancouver

Dante Labs. CSGALNACT1 gene: chondroitin sulfate N-acetylgalactosaminyltransferase 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/csgalnact1

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