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Gene

SPECC1L

sperm antigen with calponin homology and coiled-coil domains 1 like

Summary

Cytogenetic location
22q11.23
Coordinates
Chromosome 22: 24,270,831–24,417,738 (GRCh38)
Exons
17 exons across 146.9 kb
Protein
1,117 amino acids
Also known as
KIAA0376
Previous symbols
CYTSA
MANE Select transcript
ENST00000314328.14NM_015330.6
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SPECC1L yet. The test sequences your whole genome, so your data includes it all the same.

How SPECC1L is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 22, with a bracket where SPECC1L sits. SPECC1L and 21 genes near it on chromosome 22, from 23,844,285 to 24,844,284.Chromosome 2222q11.23p13p12p11.2p11.1q11.1q11.21q11.22q11.23q12.1q12.2q12.3q13.1q13.2q13.31q13.32q13.3324 Mb24.2 Mb24.4 Mb24.6 Mb24.8 MbSLC2A11: 23,856,703–23,886,312, forward strandSLC2A11: 23,862,188–23,895,223, forward strandDDT: 23,891,180–23,980,544, reverse strandMIF: 23,894,372–23,895,227, forward strandMIFGSTT2B: 23,957,414–23,961,341, reverse strandGSTT2BDDTL: 23,966,881–23,972,558, forward strandDDTLGSTT2: 23,980,058–23,983,915, forward strandGSTT2GSTT4: 23,998,397–24,005,453, reverse strandGSTT4CABIN1: 24,011,192–24,178,634, forward strandCABIN1SUSD2: 24,181,451–24,191,986, forward strandSUSD2GGT5: 24,210,982–24,245,763, reverse strandGGT5SPECC1L: 24,270,831–24,417,738, forward strandSPECC1LSPECC1L-ADORA2A: 24,270,898–24,442,356, forward strandSPECC1L-ADORA2AADORA2A: 24,417,879–24,443,177, forward strandADORA2AUPB1: 24,494,107–24,552,470, forward strandUPB1GUCD1: 24,540,423–24,555,942, reverse strandGUCD1SNRPD3: 24,555,418–24,584,050, forward strandSNRPD3: 24,556,007–24,628,987, forward strandLRRC75B: 24,580,723–24,593,208, reverse strandLRRC75BGGT1: 24,588,696–24,629,011, forward strandGGT1PIWIL3: 24,719,034–24,774,720, reverse strandPIWIL3SGSM1: 24,806,067–24,932,150, forward strandSGSM1Diagram of SPECC1L: 17 exons on the forward strand of chromosome 22Exon 14: 1 known disease-causing siteExon 1: 24,270,831–24,270,983, 153 basesExon 2: 24,276,700–24,276,803, 104 basesExon 3: 24,302,195–24,302,384, 190 basesExon 4: 24,313,313–24,313,466, 154 basesExon 5: 24,321,288–24,322,918, 1,631 basesExon 6: 24,324,220–24,324,427, 208 basesExon 7: 24,328,846–24,328,919, 74 basesExon 8: 24,330,256–24,330,431, 176 basesExon 9: 24,334,410–24,334,573, 164 basesExon 10: 24,338,386–24,338,477, 92 basesExon 11: 24,347,086–24,347,176, 91 basesExon 12: 24,363,261–24,363,344, 84 basesExon 13: 24,365,476–24,365,632, 157 basesExon 14: 24,369,218–24,369,320, 103 basesExon 15: 24,411,588–24,411,704, 117 basesExon 16: 24,412,648–24,412,707, 60 basesExon 17: 24,414,534–24,417,738, 3,205 bases1246810121416175′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 6.8 kb of the gene's 146.9 kb; 3,354 of those bases code for the protein.

How a genome test reads SPECC1L

1

position in SPECC1L where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 146.9 kb of SPECC1L, introns included, not only the 6.8 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). SPECC1L gene: sperm antigen with calponin homology and coiled-coil domains 1 like. Retrieved 16 October 2026, from https://dantelabs.com/genes/specc1l

Vancouver

Dante Labs. SPECC1L gene: sperm antigen with calponin homology and coiled-coil domains 1 like [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/specc1l

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