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Gene

SCYL2

SCY1 like pseudokinase 2

Summary

Cytogenetic location
12q23.1
Coordinates
Chromosome 12: 100,267,177–100,341,715 (GRCh38)
Exons
18 exons across 74.5 kb
Protein
929 amino acids
Also known as
KIAA1360, CVAK104
MANE Select transcript
ENST00000360820.7NM_017988.6
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SCYL2 yet. The test sequences your whole genome, so your data includes it all the same.

How SCYL2 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 12, with a bracket where SCYL2 sits. SCYL2 and 8 genes near it on chromosome 12, from 99,804,446 to 100,804,445.Chromosome 1212q23.1p13.33p13.32p13.31p13.2p13.1p12.3p12.2p12.1p11.23p11.22p11.21p11.1q11q12q13.11q13.12q13.13q13.2q13.3q14.1q14.2q14.3q15q21.1q21.2q21.31q21.32q21.33q22q23.1q23.2q23.3q24.11q24.12q24.13q24.21q24.22q24.23q24.31q24.32q24.33100 Mb100.2 Mb100.4 Mb100.6 Mb100.8 MbANKS1B: 98,726,457–99,984,964, reverse strandANKS1BBLTP3B: 100,028,455–100,142,889, reverse strandBLTP3BACTR6: 100,199,122–100,241,865, forward strandACTR6DEPDC4: 100,203,669–100,267,094, reverse strandDEPDC4SCYL2: 100,267,177–100,341,715, forward strandSCYL2SLC17A8: 100,356,842–100,422,055, forward strandSLC17A8NR1H4: 100,455,070–100,564,414, forward strandNR1H4GAS2L3: 100,573,643–100,628,288, forward strandGAS2L3ANO4: 100,717,221–101,128,648, forward strandANO4Diagram of SCYL2: 18 exons on the forward strand of chromosome 12Exon 2: 3 known disease-causing sitesExon 3: 1 known disease-causing siteExon 5: 1 known disease-causing siteExon 9: 1 known disease-causing siteExon 18: 1 known disease-causing siteExon 1: 100,267,177–100,267,792, 616 basesExon 2: 100,282,943–100,283,147, 205 basesExon 3: 100,291,503–100,291,660, 158 basesExon 4: 100,298,031–100,298,175, 145 basesExon 5: 100,311,044–100,311,193, 150 basesExon 6: 100,312,432–100,312,653, 222 basesExon 7: 100,313,422–100,313,538, 117 basesExon 8: 100,314,489–100,314,614, 126 basesExon 9: 100,315,558–100,315,734, 177 basesExon 10: 100,317,803–100,317,925, 123 basesExon 11: 100,323,525–100,323,638, 114 basesExon 12: 100,326,622–100,326,754, 133 basesExon 13: 100,329,201–100,329,319, 119 basesExon 14: 100,334,166–100,334,266, 101 basesExon 15: 100,335,625–100,335,691, 67 basesExon 16: 100,335,811–100,335,906, 96 basesExon 17: 100,337,387–100,337,506, 120 basesExon 18: 100,338,528–100,341,715, 3,188 bases151015185′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 6 kb of the gene's 74.5 kb; 2,790 of those bases code for the protein.

How a genome test reads SCYL2

7

positions in SCYL2 where ClinVar classes a change as pathogenic or likely pathogenic

1 of them (14%) falls in a region short reads find hard.

  • Segmental duplications (1 site)Copies of at least 1 kb sharing at least 90% identity with another part of the genome (paralogues, pseudogenes); reads may align to the wrong copy.

A whole genome covers all 74.5 kb of SCYL2, introns included, not only the 6 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). SCYL2 gene: SCY1 like pseudokinase 2. Retrieved 17 October 2026, from https://dantelabs.com/genes/scyl2

Vancouver

Dante Labs. SCYL2 gene: SCY1 like pseudokinase 2 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/scyl2

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