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Gene

EBF3

EBF transcription factor 3

Summary

Cytogenetic location
10q26.3
Coordinates
Chromosome 10: 129,835,233–129,964,274 (GRCh38)
Exons
17 exons across 129 kb
Protein
629 amino acids
Also known as
COE3, DKFZp667B0210
MANE Select transcript
ENST00000440978.2NM_001375380.1
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads EBF3 yet. The test sequences your whole genome, so your data includes it all the same.

How EBF3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 10, with a bracket where EBF3 sits. EBF3 and 3 genes near it on chromosome 10, from 129,399,754 to 130,399,753.Chromosome 1010q26.3p15.3p15.2p15.1p14p13p12.33p12.32p12.31p12.2p12.1p11.23p11.22p11.21p11.1q11.1q11.21q11.22q11.23q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.31q23.32q23.33q24.1q24.2q24.31q24.32q24.33q25.1q25.2q25.3q26.11q26.12q26.13q26.2q26.3129.4 Mb129.6 Mb129.8 Mb130 Mb130.2 MbMGMT: 129,466,679–129,770,983, forward strandMGMTEBF3: 129,835,233–129,964,274, reverse strandEBF3C10orf143: 130,020,025–130,110,842, reverse strandC10orf143GLRX3: 130,136,363–130,184,521, forward strandGLRX3Diagram of EBF3: 17 exons on the reverse strand of chromosome 10Exon 14: 3 known disease-causing sitesExon 13: 1 known disease-causing siteExon 12: 3 known disease-causing sitesExon 10: 2 known disease-causing sitesExon 9: 1 known disease-causing siteExon 8: 5 known disease-causing sitesExon 7: 8 known disease-causing sitesExon 6: 7 known disease-causing sitesExon 5: 7 known disease-causing sitesExon 4: 1 known disease-causing siteExon 3: 2 known disease-causing sitesExon 2: 5 known disease-causing sitesExon 17: 129,835,233–129,837,960, 2,728 basesExon 16: 129,839,083–129,839,195, 113 basesExon 15: 129,840,245–129,840,442, 198 basesExon 14: 129,840,844–129,841,032, 189 basesExon 13: 129,842,116–129,842,293, 178 basesExon 12: 129,843,137–129,843,202, 66 basesExon 11: 129,848,392–129,848,480, 89 basesExon 10: 129,867,141–129,867,267, 127 basesExon 9: 129,867,782–129,867,912, 131 basesExon 8: 129,873,452–129,873,596, 145 basesExon 7: 129,877,768–129,877,849, 82 basesExon 6: 129,957,258–129,957,326, 69 basesExon 5: 129,958,934–129,959,007, 74 basesExon 4: 129,962,171–129,962,226, 56 basesExon 3: 129,962,942–129,963,005, 64 basesExon 2: 129,963,367–129,963,523, 157 basesExon 1: 129,963,635–129,964,274, 640 bases171510515′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 5.1 kb of the gene's 129 kb; 1,890 of those bases code for the protein.

How a genome test reads EBF3

53

positions in EBF3 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 129 kb of EBF3, introns included, not only the 5.1 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). EBF3 gene: EBF transcription factor 3. Retrieved 16 October 2026, from https://dantelabs.com/genes/ebf3

Vancouver

Dante Labs. EBF3 gene: EBF transcription factor 3 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/ebf3

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