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Gene

SLC6A19

solute carrier family 6 member 19

Summary

Cytogenetic location
5p15.33
Coordinates
Chromosome 5: 1,201,595–1,225,111 (GRCh38)
Exons
12 exons across 23.5 kb
Protein
634 amino acids
Also known as
B0AT1
MANE Select transcript
ENST00000304460.11NM_001003841.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SLC6A19 yet. The test sequences your whole genome, so your data includes it all the same.

How SLC6A19 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 5, with a bracket where SLC6A19 sits. SLC6A19 and 11 genes near it on chromosome 5, from 713,353 to 1,713,352.Chromosome 55p15.33p15.33p15.32p15.31p15.2p15.1p14.3p14.2p14.1p13.3p13.2p13.1p12p11q11.1q11.2q12.1q12.2q12.3q13.1q13.2q13.3q14.1q14.2q14.3q15q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q31.1q31.2q31.3q32q33.1q33.2q33.3q34q35.1q35.2q35.30.8 Mb1 Mb1.2 Mb1.4 Mb1.6 MbZDHHC11B: 710,355–784,729, reverse strandZDHHC11BZDHHC11: 795,605–858,973, reverse strandZDHHC11BRD9: 850,291–892,838, reverse strandBRD9TRIP13: 892,849–919,357, forward strandTRIP13NKD2: 1,008,021–1,040,630, forward strandNKD2SLC12A7: 1,050,384–1,156,237, reverse strandSLC12A7SLC6A19: 1,201,595–1,225,111, forward strandSLC6A19SLC6A18: 1,225,381–1,246,189, forward strandSLC6A18TERT: 1,253,147–1,295,086, reverse strandTERTCLPTM1L: 1,316,821–1,345,100, reverse strandCLPTM1LSLC6A3: 1,392,794–1,445,514, reverse strandSLC6A3LPCAT1: 1,456,480–1,524,282, reverse strandLPCAT1Diagram of SLC6A19: 12 exons on the forward strand of chromosome 5Exon 1: 3 known disease-causing sitesExon 2: 2 known disease-causing sitesExon 4: 4 known disease-causing sitesExon 5: 1 known disease-causing siteExon 6: 2 known disease-causing sitesExon 8: 3 known disease-causing sitesExon 9: 1 known disease-causing siteExon 10: 2 known disease-causing sitesExon 11: 4 known disease-causing sitesExon 12: 2 known disease-causing sitesExon 1: 1,201,595–1,201,852, 258 basesExon 2: 1,208,746–1,208,886, 141 basesExon 3: 1,210,444–1,210,581, 138 basesExon 4: 1,212,303–1,212,484, 182 basesExon 5: 1,213,463–1,213,573, 111 basesExon 6: 1,213,953–1,214,065, 113 basesExon 7: 1,216,558–1,216,686, 129 basesExon 8: 1,216,789–1,216,945, 157 basesExon 9: 1,218,903–1,219,107, 205 basesExon 10: 1,219,505–1,219,664, 160 basesExon 11: 1,221,151–1,221,313, 163 basesExon 12: 1,221,701–1,225,111, 3,411 bases1246810125′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 5.2 kb of the gene's 23.5 kb; 1,905 of those bases code for the protein.

How a genome test reads SLC6A19

28

positions in SLC6A19 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 23.5 kb of SLC6A19, introns included, not only the 5.2 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). SLC6A19 gene: solute carrier family 6 member 19. Retrieved 17 October 2026, from https://dantelabs.com/genes/slc6a19

Vancouver

Dante Labs. SLC6A19 gene: solute carrier family 6 member 19 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/slc6a19

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