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Gene

VIPAS39

VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog

Summary

Cytogenetic location
14q24.3
Coordinates
Chromosome 14: 77,426,675–77,457,601 (GRCh38)
Exons
20 exons across 30.9 kb
Protein
493 amino acids
Also known as
VIPAR, VPS16B, SPE-39, SPE39, hSPE-39
Previous symbols
C14orf133
MANE Select transcript
ENST00000557658.6NM_001193315.2
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads VIPAS39 yet. The test sequences your whole genome, so your data includes it all the same.

How VIPAS39 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 14, with a bracket where VIPAS39 sits. VIPAS39 and 18 genes near it on chromosome 14, from 76,942,138 to 77,942,137.Chromosome 1414q24.3p13p12p11.2p11.1q11.1q11.2q12q13.1q13.2q13.3q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q31.1q31.2q31.3q32.11q32.12q32.13q32.2q32.31q32.32q32.3377 Mb77.2 Mb77.4 Mb77.6 Mb77.8 MbIRF2BPL: 77,024,543–77,028,708, reverse strandIRF2BPLCIPC: 77,098,126–77,117,287, forward strandCIPC: 77,098,311–77,225,462, forward strandTMEM63C: 77,116,568–77,259,498, forward strandTMEM63CZDHHC22: 77,131,266–77,143,032, reverse strandZDHHC22NGB: 77,265,483–77,271,211, reverse strandNGBPOMT2: 77,274,956–77,320,898, reverse strandPOMT2GSTZ1: 77,320,996–77,344,021, forward strandGSTZ1TMED8: 77,335,024–77,377,348, reverse strandTMED8SAMD15: 77,376,689–77,392,372, forward strandSAMD15NOXRED1: 77,394,021–77,423,523, reverse strandNOXRED1VIPAS39: 77,426,675–77,457,601, reverse strandVIPAS39AHSA1: 77,457,743–77,469,482, forward strandAHSA1ISM2: 77,474,394–77,499,408, reverse strandISM2SPTLC2: 77,505,997–77,616,781, reverse strandSPTLC2ALKBH1: 77,672,401–77,708,038, reverse strandALKBH1SLIRP: 77,708,045–77,761,104, forward strandSLIRPSNW1: 77,709,019–77,761,207, reverse strandSNW1ADCK1: 77,800,059–77,937,188, forward strandADCK1Diagram of VIPAS39: 20 exons on the reverse strand of chromosome 14Exon 14: 1 known disease-causing siteExon 12: 1 known disease-causing siteExon 10: 1 known disease-causing siteExon 9: 1 known disease-causing siteExon 7: 2 known disease-causing sitesExon 3: 2 known disease-causing sitesExon 20: 77,426,675–77,427,636, 962 basesExon 19: 77,428,370–77,428,474, 105 basesExon 18: 77,429,006–77,429,095, 90 basesExon 17: 77,429,681–77,429,767, 87 basesExon 16: 77,433,842–77,433,931, 90 basesExon 15: 77,434,262–77,434,303, 42 basesExon 14: 77,435,259–77,435,393, 135 basesExon 13: 77,435,844–77,435,919, 76 basesExon 12: 77,437,808–77,437,881, 74 basesExon 11: 77,441,066–77,441,093, 28 basesExon 10: 77,442,560–77,442,662, 103 basesExon 9: 77,443,119–77,443,152, 34 basesExon 8: 77,444,249–77,444,341, 93 basesExon 7: 77,448,494–77,448,550, 57 basesExon 6: 77,449,293–77,449,357, 65 basesExon 5: 77,449,714–77,449,752, 39 basesExon 4: 77,451,187–77,451,333, 147 basesExon 3: 77,453,299–77,453,401, 103 basesExon 2: 77,454,010–77,454,102, 93 basesExon 1: 77,457,495–77,457,601, 107 bases201816141210864215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.5 kb of the gene's 30.9 kb; 1,482 of those bases code for the protein.

How a genome test reads VIPAS39

11

positions in VIPAS39 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 30.9 kb of VIPAS39, introns included, not only the 2.5 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). VIPAS39 gene: VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog. Retrieved 17 October 2026, from https://dantelabs.com/genes/vipas39

Vancouver

Dante Labs. VIPAS39 gene: VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/vipas39

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