Skip to content
Use your HSA or FSA funds

Gene

SMARCD1

SWI/SNF related BAF chromatin remodeling complex subunit D1

Summary

Cytogenetic location
12q13.12
Coordinates
Chromosome 12: 50,085,342–50,100,707 (GRCh38)
Exons
13 exons across 15.4 kb
Protein
515 amino acids
Also known as
BAF60A, Rsc6p, CRACD1
MANE Select transcript
ENST00000394963.9NM_003076.5
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SMARCD1 yet. The test sequences your whole genome, so your data includes it all the same.

How SMARCD1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 12, with a bracket where SMARCD1 sits. SMARCD1 and 19 genes near it on chromosome 12, from 49,593,025 to 50,593,024.Chromosome 1212q13.12p13.33p13.32p13.31p13.2p13.1p12.3p12.2p12.1p11.23p11.22p11.21p11.1q11q12q13.11q13.12q13.13q13.2q13.3q14.1q14.2q14.3q15q21.1q21.2q21.31q21.32q21.33q22q23.1q23.2q23.3q24.11q24.12q24.13q24.21q24.22q24.23q24.31q24.32q24.3349.6 Mb49.8 Mb50 Mb50.2 Mb50.4 MbPRPF40B: 49,568,218–49,644,666, forward strandPRPF40BFAM186B: 49,582,885–49,605,639, reverse strandFAM186BFMNL3: 49,636,499–49,708,165, reverse strandFMNL3TMBIM6: 49,707,725–49,764,935, forward strandTMBIM6NCKAP5L: 49,790,615–49,828,750, reverse strandNCKAP5LBCDIN3D: 49,836,043–49,843,133, reverse strandBCDIN3DFAIM2: 49,866,896–49,904,217, reverse strandFAIM2AQP2: 49,950,736–49,958,881, forward strandAQP2AQP5: 49,961,228–49,965,682, forward strandAQP5AQP6: 49,967,194–49,977,152, forward strandAQP6RACGAP1: 49,976,923–50,033,136, reverse strandRACGAP1ASIC1: 50,057,351–50,083,621, forward strandASIC1SMARCD1: 50,085,342–50,100,707, forward strandSMARCD1GPD1: 50,103,982–50,129,648, forward strandGPD1COX14: 50,111,982–50,120,463, forward strandCOX14CERS5: 50,129,289–50,167,533, reverse strandCERS5LIMA1: 50,175,788–50,283,550, reverse strandLIMA1FAM186A: 50,326,230–50,396,622, reverse strandFAM186ALARP4: 50,392,383–50,480,007, forward strandLARP4DIP2B: 50,504,962–50,748,657, forward strandDIP2BDiagram of SMARCD1: 13 exons on the forward strand of chromosome 12Exon 11: 1 known disease-causing siteExon 1: 50,085,342–50,085,546, 205 basesExon 2: 50,086,161–50,086,348, 188 basesExon 3: 50,086,621–50,086,663, 43 basesExon 4: 50,086,756–50,086,878, 123 basesExon 5: 50,087,363–50,087,485, 123 basesExon 6: 50,088,521–50,088,637, 117 basesExon 7: 50,089,884–50,089,985, 102 basesExon 8: 50,090,241–50,090,402, 162 basesExon 9: 50,090,493–50,090,590, 98 basesExon 10: 50,094,437–50,094,572, 136 basesExon 11: 50,096,850–50,096,972, 123 basesExon 12: 50,098,714–50,098,815, 102 basesExon 13: 50,098,947–50,100,707, 1,761 bases124681012135′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.3 kb of the gene's 15.4 kb; 1,548 of those bases code for the protein.

How a genome test reads SMARCD1

1

position in SMARCD1 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 15.4 kb of SMARCD1, introns included, not only the 3.3 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). SMARCD1 gene: SWI/SNF related BAF chromatin remodeling complex subunit D1. Retrieved 17 October 2026, from https://dantelabs.com/genes/smarcd1

Vancouver

Dante Labs. SMARCD1 gene: SWI/SNF related BAF chromatin remodeling complex subunit D1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/smarcd1

One test. A lifetime of answers.

From $449Free shipping · Results in 6–8 weeks

Get my Genome Test