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Gene

POPDC2

popeye domain cAMP effector 2

Summary

Cytogenetic location
3q13.33
Coordinates
Chromosome 3: 119,642,056–119,660,589 (GRCh38)
Exons
4 exons across 18.5 kb
Protein
368 amino acids
Also known as
POP2
MANE Select transcript
ENST00000493094.6NM_001369919.2
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated report relevant to this gene

How POPDC2 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 3, with a bracket where POPDC2 sits. POPDC2 and 16 genes near it on chromosome 3, from 119,151,323 to 120,151,322.Chromosome 33q13.33p26.3p26.2p26.1p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p14.3p14.2p14.1p13p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13.11q13.12q13.13q13.2q13.31q13.32q13.33q21.1q21.2q21.3q22.1q22.2q22.3q23q24q25.1q25.2q25.31q25.32q25.33q26.1q26.2q26.31q26.32q26.33q27.1q27.2q27.3q28q29119.2 Mb119.4 Mb119.6 Mb119.8 Mb120 MbTEX55: 119,146,151–119,160,042, forward strandTEX55: 119,147,375–119,187,807, forward strandUPK1B: 119,173,516–119,205,758, forward strandUPK1BB4GALT4: 119,208,851–119,240,952, reverse strandB4GALT4ARHGAP31: 119,294,031–119,420,824, forward strandARHGAP31TMEM39A: 119,428,949–119,468,854, reverse strandTMEM39APOGLUT1: 119,468,791–119,494,708, forward strandPOGLUT1TIMMDC1: 119,498,515–119,525,090, forward strandTIMMDC1CD80: 119,523,073–119,580,616, reverse strandCD80ADPRH: 119,579,268–119,590,165, forward strandADPRHPLA1A: 119,597,808–119,629,818, forward strandPLA1APOPDC2: 119,642,056–119,660,589, reverse strandPOPDC2COX17: 119,654,513–119,677,621, reverse strandCOX17CFAP91: 119,702,990–119,767,102, forward strandCFAP91: 119,703,076–119,807,570, forward strandNR1I2: 119,780,484–119,818,718, forward strandNR1I2GSK3B: 119,821,321–120,095,712, reverse strandGSK3BDiagram of POPDC2: 4 exons on the reverse strand of chromosome 3Exon 4: 119,642,056–119,642,561, 506 basesExon 3: 119,648,119–119,648,668, 550 basesExon 2: 119,654,505–119,654,613, 109 basesExon 1: 119,659,933–119,660,589, 657 bases43215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.8 kb of the gene's 18.5 kb; 1,107 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • GenCC and ClinGen, released 2026-10-16: which conditions the gene is linked to, and how strongly.
  • The ACMG secondary findings list, SF v3.2.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). POPDC2 gene: popeye domain cAMP effector 2. Retrieved 16 October 2026, from https://dantelabs.com/genes/popdc2

Vancouver

Dante Labs. POPDC2 gene: popeye domain cAMP effector 2 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/popdc2

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