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Gene

NUP54

nucleoporin 54

Summary

Cytogenetic location
4q21.1
Coordinates
Chromosome 4: 76,114,664–76,148,397 (GRCh38)
Exons
12 exons across 33.7 kb
Protein
507 amino acids
MANE Select transcript
ENST00000264883.8NM_017426.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads NUP54 yet. The test sequences your whole genome, so your data includes it all the same.

How NUP54 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 4, with a bracket where NUP54 sits. NUP54 and 15 genes near it on chromosome 4, from 75,631,531 to 76,631,530.Chromosome 44q21.1p16.3p16.2p16.1p15.33p15.32p15.31p15.2p15.1p14p13p12p11q11q12q13.1q13.2q13.3q21.1q21.21q21.22q21.23q21.3q22.1q22.2q22.3q23q24q25q26q27q28.1q28.2q28.3q31.1q31.21q31.22q31.23q31.3q32.1q32.2q32.3q33q34.1q34.2q34.3q35.1q35.275.8 Mb76 Mb76.2 Mb76.4 Mb76.6 MbG3BP2: 75,641,849–75,726,301, reverse strandG3BP2USO1: 75,724,522–75,814,290, forward strandUSO1PPEF2: 75,859,864–75,902,571, reverse strandPPEF2NAAA: 75,910,655–75,941,118, reverse strandNAAASDAD1: 75,940,950–75,990,962, reverse strandSDAD1CXCL9: 76,001,275–76,007,515, reverse strandCXCL9ART3: 76,011,176–76,114,094, forward strandART3CXCL10: 76,021,118–76,023,518, reverse strandCXCL10CXCL11: 76,033,682–76,050,206, reverse strandCXCL11NUP54: 76,114,664–76,148,397, reverse strandNUP54SCARB2: 76,158,723–76,234,536, reverse strandSCARB2FAM47E: 76,214,040–76,284,296, forward strandFAM47EFAM47E-STBD1: 76,251,721–76,311,129, forward strandFAM47E-STBD1STBD1: 76,306,275–76,314,086, forward strandSTBD1CCDC158: 76,312,997–76,421,868, reverse strandCCDC158SHROOM3: 76,435,158–76,783,253, forward strandSHROOM3Diagram of NUP54: 12 exons on the reverse strand of chromosome 4Exon 12: 76,114,664–76,115,494, 831 basesExon 11: 76,117,664–76,117,774, 111 basesExon 10: 76,118,075–76,118,194, 120 basesExon 9: 76,124,649–76,124,756, 108 basesExon 8: 76,130,656–76,130,749, 94 basesExon 7: 76,131,230–76,131,284, 55 basesExon 6: 76,132,523–76,132,719, 197 basesExon 5: 76,134,175–76,134,362, 188 basesExon 4: 76,136,186–76,136,412, 227 basesExon 3: 76,144,149–76,144,292, 144 basesExon 2: 76,144,390–76,144,473, 84 basesExon 1: 76,148,308–76,148,397, 90 bases1210864215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.2 kb of the gene's 33.7 kb; 1,524 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.

Cite this page

APA

Dante Labs. (n.d.). NUP54 gene: nucleoporin 54. Retrieved 17 October 2026, from https://dantelabs.com/genes/nup54

Vancouver

Dante Labs. NUP54 gene: nucleoporin 54 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/nup54

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