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Gene

SALL4

spalt like transcription factor 4

Summary

Cytogenetic location
20q13.2
Coordinates
Chromosome 20: 51,782,331–51,802,521 (GRCh38)
Exons
4 exons across 20.2 kb
Protein
1,053 amino acids
Also known as
dJ1112F19.1, ZNF797
MANE Select transcript
ENST00000217086.9NM_020436.5
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SALL4 yet. The test sequences your whole genome, so your data includes it all the same.

How SALL4 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 20, with a bracket where SALL4 sits. SALL4 and 3 genes near it on chromosome 20, from 51,292,426 to 52,292,425.Chromosome 2020q13.2p13p12.3p12.2p12.1p11.23p11.22p11.21p11.1q11.1q11.21q11.22q11.23q12q13.11q13.12q13.13q13.2q13.31q13.32q13.3351.4 Mb51.6 Mb51.8 Mb52 Mb52.2 MbNFATC2: 51,386,957–51,563,072, reverse strandNFATC2ATP9A: 51,596,512–51,768,716, reverse strandATP9ASALL4: 51,782,331–51,802,521, reverse strandSALL4ZFP64: 52,046,638–52,204,308, reverse strandZFP64Diagram of SALL4: 4 exons on the reverse strand of chromosome 20Exon 4: 1 known disease-causing siteExon 3: 4 known disease-causing sitesExon 2: 26 known disease-causing sitesExon 4: 51,782,331–51,784,684, 2,354 basesExon 3: 51,788,861–51,789,141, 281 basesExon 2: 51,790,022–51,792,352, 2,331 basesExon 1: 51,802,279–51,802,521, 243 bases43215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 5.2 kb of the gene's 20.2 kb; 3,162 of those bases code for the protein.

How a genome test reads SALL4

33

positions in SALL4 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 20.2 kb of SALL4, introns included, not only the 5.2 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). SALL4 gene: spalt like transcription factor 4. Retrieved 17 October 2026, from https://dantelabs.com/genes/sall4

Vancouver

Dante Labs. SALL4 gene: spalt like transcription factor 4 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/sall4

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