Gene
KCTD7
potassium channel tetramerization domain containing 7
- HGNC 21957↗(opens in a new tab)
- Ensembl gene ENSG00000243335↗(opens in a new tab)
- NCBI Gene 154881↗(opens in a new tab)
Summary
- Cytogenetic location
- 7q11.21
- Coordinates
- Chromosome 7: 66,628,881–66,643,047 (GRCh38)
- Exons
- 4 exons across 14.2 kb
- Protein
- 289 amino acids
- Inheritance
- Autosomal recessive
- Also known as
- FLJ32069, EPM3, CLN14
- MANE Select transcript
- ENST00000639828.2NM_153033.5
- Locus type
- gene with protein product
- Very high
- Confident
- Low
- Very low
Reference genomeGRCh38hg38
Positions on gene and variant pages follow this choice, in this browser.
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Get my Genome TestCurated reports relevant to this gene
Neuronal Ceroid Lipofuscinosis
- Autosomal recessive
A group of inherited progressive degenerative brain diseases characterized clinically by a decline of mental and other capacities, epilepsy, and vision loss through retinal degeneration, and histopathologically by intracellular accumulation of an autofluorescent material, ceroid lipofuscin, in the neuronal cells in the brain and in the retina.
- 4 GenCC submitters rate it definitive or strong
Broader groupings
Congenital Disorders of Glycosylation
- Congenital Disorders of Glycosylation (CDG)
One of 98 genes linked to it
A large group of inherited conditions in which sugar chains (glycans) are not correctly built or attached to proteins and lipids, often affecting the brain, liver, blood clotting, growth and many other body systems. Most are autosomal recessive, but some are X-linked or autosomal dominant.
- 4 GenCC submitters rate it definitive or strong
Epilepsy (Full Panel)
- Epilepsy
One of 171 genes linked to it
A brain disorder characterized by episodes of abnormally increased neuronal discharge resulting in transient episodes of sensory or motor neurological dysfunction, or psychic dysfunction. These episodes may or may not be associated with loss of consciousness or convulsions.
- ClinGen rates the link definitive
- 5 GenCC submitters rate it definitive or strong
Lysosomal Storage Disease
- Lysosomal storage disease (other and unspecified types)
One of 59 genes linked to it
Covers lysosomal storage diseases without a dedicated report, such as Farber disease and other ASAH1-related disorders, prosaposin (PSAP) deficiencies, multiple sulfatase deficiency, mucopolysaccharidosis types IX and X, and Dorfman-Chanarin disease; inheritance varies by subtype, most often autosomal recessive.
- 4 GenCC submitters rate it definitive or strong
Inheritance
- Autosomal recessive
- It takes a changed copy from each parent. With one, you are a carrier and usually unaffected; when both parents are carriers, each child has a one-in-four chance of inheriting two.
How KCTD7 is laid out
- Coding sequence
- Untranslated region
- Intron
- Direction of transcription
- Known disease-causing sites
- Stretches short reads find hard
Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.
Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).
Nearby genes from Ensembl release 116, on GRCh38.
Exons make up 4.9 kb of the gene's 14.2 kb; 870 of those bases code for the protein.
How a genome test reads KCTD7
27
positions in KCTD7 where ClinVar classes a change as pathogenic or likely pathogenic
None of them falls in a region short reads find hard.
A whole genome covers all 14.2 kb of KCTD7, introns included, not only the 4.9 kb of exons.
Genes linked to the same conditions
- CLN8CLN8 transmembrane ER and ERGIC proteinShares 3 conditions
- ALG13ALG13 UDP-N-acetylglucosaminyltransferase subunitShares 2 conditions
- ATP6AP2ATPase H+ transporting accessory protein 2Shares 2 conditions
- CADcarbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotaseShares 2 conditions
- CLCN6Cl-/H+ antiporter 6Shares 2 conditions
- CLN3CLN3 lysosomal/endosomal transmembrane protein, batteninShares 2 conditions
- CLN5CLN5 lysosomal BMP synthaseShares 2 conditions
- CLN6CLN6 transmembrane ER proteinShares 2 conditions
- CTSDcathepsin DShares 2 conditions
- CTSFcathepsin FShares 2 conditions
- DNAJC5DnaJ heat shock protein family (Hsp40) member C5Shares 2 conditions
- GNEglucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinaseShares 2 conditions
Traits linked to KCTD7
The Human Phenotype Ontology lists these as features of the rare conditions KCTD7 can cause. Each trait's page lists the other genes linked to it.
Abnormality of the nervous system
- Absent speech development
- Degeneration of cerebellum
- Degeneration of cerebrum
- Difficulty articulating speech
- Instability or lack of coordination of central trunk muscles
- Intellectual disability
- Loss of developmental milestones
- Bilateral tonic-clonic seizure with focal onset
Show 18 more traits
- Focal EEG discharges with secondary generalization
- Focal myoclonic seizure
- Jerking
- Myoclonic status epilepticus
- Progressive psychomotor deterioration
- Progressive truncal ataxia
- Underdevelopment of part of brain called corpus callosum
- Aplasia/Hypoplasia of the corpus callosum
- Chin myoclonus
- Dementia
- EEG with focal epileptiform discharges
- Febrile seizure (within the age range of 3 months to 6 years)
- Grand mal seizures
- Limb myoclonus
- Photosensitive myoclonic seizure
- Progressive cerebellar ataxia
- Generalized myoclonic seizure
- Myoclonic seizure
External links
Gene records
Transcript
Protein
Where this comes from
- HGNC: the gene's symbol, name, other symbols and location.
- MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
- GenCC and ClinGen, released 2026-10-16: which conditions the gene is linked to, and how strongly.
- The ACMG secondary findings list, SF v3.2.
- ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
- The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
- Data release 2026.10.16-c6eea6bf.
Cite this page
Dante Labs. (n.d.). KCTD7 gene: potassium channel tetramerization domain containing 7. Retrieved 16 October 2026, from https://dantelabs.com/genes/kctd7
Dante Labs. KCTD7 gene: potassium channel tetramerization domain containing 7 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/kctd7
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