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Gene

SLC39A13

solute carrier family 39 member 13

Summary

Cytogenetic location
11p11.2
Coordinates
Chromosome 11: 47,408,590–47,416,496 (GRCh38)
Exons
10 exons across 7.9 kb
Protein
371 amino acids
Also known as
FLJ25785, LZT-Hs9, ZIP13, ZIP-13
MANE Select transcript
ENST00000362021.9NM_001128225.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated report relevant to this gene

How SLC39A13 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
Chromosome 11, with a bracket where SLC39A13 sits. SLC39A13 and 22 genes near it on chromosome 11, from 46,912,543 to 47,912,542.Chromosome 1111p11.2p15.5p15.4p15.3p15.2p15.1p14.3p14.2p14.1p13p12p11.2p11.12p11.11q11q12.1q12.2q12.3q13.1q13.2q13.3q13.4q13.5q14.1q14.2q14.3q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q2547 Mb47.2 Mb47.4 Mb47.6 Mb47.8 MbLRP4: 46,856,717–46,918,642, reverse strandLRP4CSTPP1: 46,936,689–47,165,535, forward strandCSTPP1ARFGAP2: 47,135,667–47,177,474, reverse strandARFGAP2PACSIN3: 47,177,511–47,187,487, reverse strandPACSIN3DDB2: 47,214,435–47,240,555, forward strandDDB2ACP2: 47,237,598–47,249,288, reverse strandACP2NR1H3: 47,248,300–47,269,131, forward strandNR1H3MADD: 47,269,161–47,330,038, forward strandMADDMYBPC3: 47,331,406–47,352,702, reverse strandMYBPC3SPI1: 47,354,860–47,409,369, reverse strandSPI1SLC39A13: 47,408,590–47,416,496, forward strandSLC39A13PSMC3: 47,418,765–47,426,488, reverse strandPSMC3RAPSN: 47,436,816–47,449,192, reverse strandRAPSNCELF1: 47,465,933–47,565,569, reverse strandCELF1NDUFS3: 47,565,336–47,584,565, forward strandNDUFS3PTPMT1: 47,565,430–47,573,461, forward strandPTPMT1KBTBD4: 47,572,196–47,578,982, reverse strandKBTBD4FAM180B: 47,586,207–47,589,195, forward strandC1QTNF4: 47,589,666–47,595,642, reverse strandMTCH2: 47,604,339–47,642,698, reverse strandAGBL2: 47,659,591–47,715,389, reverse strandAGBL2FNBP4: 47,716,494–47,767,460, reverse strandFNBP4NUP160: 47,777,872–47,848,561, reverse strandNUP160Diagram of SLC39A13: 10 exons on the forward strand of chromosome 11Exon 3: 1 known disease-causing siteExon 4: 1 known disease-causing siteExon 1: 47,408,590–47,408,662, 73 basesExon 2: 47,410,087–47,410,395, 309 basesExon 3: 47,411,926–47,412,039, 114 basesExon 4: 47,412,346–47,412,467, 122 basesExon 5: 47,413,400–47,413,507, 108 basesExon 6: 47,413,597–47,413,686, 90 basesExon 7: 47,414,425–47,414,475, 51 basesExon 8: 47,414,777–47,414,909, 133 basesExon 9: 47,415,039–47,415,159, 121 basesExon 10: 47,415,288–47,416,496, 1,209 bases123456789105′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.3 kb of the gene's 7.9 kb; 1,116 of those bases code for the protein.

How a genome test reads SLC39A13

2

positions in SLC39A13 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 7.9 kb of SLC39A13, introns included, not only the 2.3 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • GenCC and ClinGen, released 2026-10-16: which conditions the gene is linked to, and how strongly.
  • The ACMG secondary findings list, SF v3.2.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). SLC39A13 gene: solute carrier family 39 member 13. Retrieved 17 October 2026, from https://dantelabs.com/genes/slc39a13

Vancouver

Dante Labs. SLC39A13 gene: solute carrier family 39 member 13 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/slc39a13

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