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Gene

GLYCTK

glycerate kinase

Summary

Cytogenetic location
3p21.2
Coordinates
Chromosome 3: 52,287,828–52,295,257 (GRCh38)
Exons
5 exons across 7.4 kb
Protein
523 amino acids
Also known as
HBEBP4, HBEBP2
MANE Select transcript
ENST00000436784.7NM_145262.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads GLYCTK yet. The test sequences your whole genome, so your data includes it all the same.

How GLYCTK is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
Chromosome 3, with a bracket where GLYCTK sits. GLYCTK and 37 genes near it on chromosome 3, from 51,791,543 to 52,791,542.Chromosome 33p21.2p26.3p26.2p26.1p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p14.3p14.2p14.1p13p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13.11q13.12q13.13q13.2q13.31q13.32q13.33q21.1q21.2q21.3q22.1q22.2q22.3q23q24q25.1q25.2q25.31q25.32q25.33q26.1q26.2q26.31q26.32q26.33q27.1q27.2q27.3q28q2951.8 Mb52 Mb52.2 Mb52.4 Mb52.6 Mb: 51,798,803–51,830,856, forward strandIQCF1: 51,809,295–51,903,369, reverse strandIQCF1IQCF3: 51,826,883–51,833,389, forward strandIQCF3IQCF2: 51,861,615–51,863,424, forward strandIQCF2IQCF5: 51,873,721–51,875,601, reverse strandIQCF5RRP9: 51,933,425–51,941,946, reverse strandPARP3: 51,942,252–51,949,371, forward strandGPR62: 51,955,381–51,957,499, forward strandPCBP4: 51,957,448–51,974,630, reverse strandABHD14B: 51,968,510–51,983,409, reverse strandABHD14A: 51,971,426–51,982,398, forward strandABHD14AABHD14A-ACY1: 51,974,706–51,989,183, forward strandABHD14A-ACY1ACY1: 51,983,047–51,989,457, forward strandACY1RPL29: 51,993,522–51,996,021, reverse strandRPL29DUSP7: 52,048,919–52,056,577, reverse strandDUSP7POC1A: 52,074,590–52,154,746, reverse strandPOC1AALAS1: 52,198,085–52,214,620, forward strandTLR9: 52,221,080–52,225,651, reverse strandTLR9: 52,221,081–52,231,190, reverse strandTWF2: 52,228,612–52,246,788, reverse strandTWF2PPM1M: 52,245,741–52,250,616, forward strandPPM1MWDR82: 52,254,434–52,288,020, reverse strandWDR82GLYCTK: 52,287,828–52,295,257, forward strandGLYCTKDNAH1: 52,316,319–52,400,492, forward strandDNAH1BAP1: 52,398,585–52,410,038, reverse strandBAP1PHF7: 52,410,504–52,427,966, forward strandPHF7SEMA3G: 52,433,035–52,445,103, reverse strandSEMA3GTNNC1: 52,451,082–52,454,071, reverse strandTNNC1NISCH: 52,455,118–52,493,081, forward strandNISCHSTAB1: 52,495,331–52,524,512, forward strandSTAB1NT5DC2: 52,524,369–52,535,093, reverse strandNT5DC2UQCC5: 52,533,950–52,579,237, forward strandUQCC5PBRM1: 52,544,271–52,685,979, reverse strandPBRM1GNL3: 52,681,156–52,696,160, forward strandGNL3GLT8D1: 52,691,527–52,706,368, reverse strandGLT8D1SPCS1: 52,704,955–52,711,148, forward strandSPCS1NEK4: 52,708,444–52,770,973, reverse strandNEK4ITIH1: 52,777,559–52,792,068, forward strandITIH1Diagram of GLYCTK: 5 exons on the forward strand of chromosome 3Exon 4: 1 known disease-causing siteExon 5: 2 known disease-causing sitesExon 1: 52,287,828–52,287,876, 49 basesExon 2: 52,290,304–52,290,719, 416 basesExon 3: 52,290,960–52,291,111, 152 basesExon 4: 52,291,747–52,291,922, 176 basesExon 5: 52,292,260–52,295,257, 2,998 bases123455′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.8 kb of the gene's 7.4 kb; 1,572 of those bases code for the protein.

How a genome test reads GLYCTK

3

positions in GLYCTK where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 7.4 kb of GLYCTK, introns included, not only the 3.8 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). GLYCTK gene: glycerate kinase. Retrieved 17 October 2026, from https://dantelabs.com/genes/glyctk

Vancouver

Dante Labs. GLYCTK gene: glycerate kinase [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/glyctk

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