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Gene

PHF7

PHD finger protein 7

Summary

Cytogenetic location
3p21.1
Coordinates
Chromosome 3: 52,410,660–52,423,641 (GRCh38)
Exons
11 exons across 13 kb
Protein
381 amino acids
Also known as
NYD-SP6, HSPC226
MANE Select transcript
ENST00000327906.8NM_016483.7
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads PHF7 yet. The test sequences your whole genome, so your data includes it all the same.

How PHF7 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 3, with a bracket where PHF7 sits. PHF7 and 39 genes near it on chromosome 3, from 51,917,151 to 52,917,150.Chromosome 33p21.1p26.3p26.2p26.1p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p14.3p14.2p14.1p13p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13.11q13.12q13.13q13.2q13.31q13.32q13.33q21.1q21.2q21.3q22.1q22.2q22.3q23q24q25.1q25.2q25.31q25.32q25.33q26.1q26.2q26.31q26.32q26.33q27.1q27.2q27.3q28q2952 Mb52.2 Mb52.4 Mb52.6 Mb52.8 MbRRP9: 51,933,425–51,941,946, reverse strandPARP3: 51,942,252–51,949,371, forward strandGPR62: 51,955,381–51,957,499, forward strandPCBP4: 51,957,448–51,974,630, reverse strandABHD14B: 51,968,510–51,983,409, reverse strandABHD14A: 51,971,426–51,982,398, forward strandABHD14AABHD14A-ACY1: 51,974,706–51,989,183, forward strandABHD14A-ACY1ACY1: 51,983,047–51,989,457, forward strandACY1RPL29: 51,993,522–51,996,021, reverse strandRPL29DUSP7: 52,048,919–52,056,577, reverse strandDUSP7POC1A: 52,074,590–52,154,746, reverse strandPOC1AALAS1: 52,198,085–52,214,620, forward strandTLR9: 52,221,080–52,225,651, reverse strandTLR9: 52,221,081–52,231,190, reverse strandTWF2: 52,228,612–52,246,788, reverse strandTWF2PPM1M: 52,245,741–52,250,616, forward strandPPM1MWDR82: 52,254,434–52,288,020, reverse strandWDR82GLYCTK: 52,286,945–52,295,273, forward strandGLYCTKDNAH1: 52,316,319–52,400,492, forward strandDNAH1BAP1: 52,398,585–52,410,038, reverse strandBAP1PHF7: 52,410,660–52,423,641, forward strandPHF7SEMA3G: 52,433,035–52,445,103, reverse strandSEMA3GTNNC1: 52,451,082–52,454,071, reverse strandTNNC1NISCH: 52,455,118–52,493,081, forward strandNISCHSTAB1: 52,495,331–52,524,512, forward strandSTAB1NT5DC2: 52,524,369–52,535,093, reverse strandNT5DC2UQCC5: 52,533,950–52,579,237, forward strandUQCC5PBRM1: 52,544,271–52,685,979, reverse strandPBRM1GNL3: 52,681,156–52,696,160, forward strandGNL3GLT8D1: 52,691,527–52,706,368, reverse strandGLT8D1SPCS1: 52,704,955–52,711,148, forward strandSPCS1NEK4: 52,708,444–52,770,973, reverse strandNEK4ITIH1: 52,777,559–52,792,068, forward strandITIH1ITIH3: 52,794,450–52,809,881, forward strandITIH3ITIH4: 52,812,918–52,831,069, reverse strandITIH4: 52,813,282–52,835,729, reverse strandMUSTN1: 52,833,113–52,835,222, reverse strandSTIMATE-MUSTN1: 52,833,121–52,897,562, reverse strandSTIMATE: 52,836,219–52,897,621, reverse strandSFMBT1: 52,903,345–53,046,750, reverse strandSFMBT1Diagram of PHF7: 11 exons on the forward strand of chromosome 3Exon 1: 52,410,660–52,411,247, 588 basesExon 2: 52,412,811–52,412,920, 110 basesExon 3: 52,413,996–52,414,048, 53 basesExon 4: 52,414,496–52,414,587, 92 basesExon 5: 52,419,833–52,419,934, 102 basesExon 6: 52,420,311–52,420,435, 125 basesExon 7: 52,420,903–52,421,062, 160 basesExon 8: 52,421,648–52,421,754, 107 basesExon 9: 52,422,222–52,422,338, 117 basesExon 10: 52,422,760–52,422,881, 122 basesExon 11: 52,423,091–52,423,641, 551 bases12345678910115′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.1 kb of the gene's 13 kb; 1,146 of those bases code for the protein.

How a genome test reads PHF7

3

positions in PHF7 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 13 kb of PHF7, introns included, not only the 2.1 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). PHF7 gene: PHD finger protein 7. Retrieved 17 October 2026, from https://dantelabs.com/genes/phf7

Vancouver

Dante Labs. PHF7 gene: PHD finger protein 7 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/phf7

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