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Gene

CDK5RAP2

CDK5 regulatory subunit associated protein 2

Summary

Cytogenetic location
9q33.2
Coordinates
Chromosome 9: 120,388,875–120,580,167 (GRCh38)
Exons
38 exons across 191.3 kb
Protein
1,893 amino acids
Also known as
C48, FLJ10867, CEP215
Previous symbols
MCPH3
MANE Select transcript
ENST00000349780.9NM_018249.6
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads CDK5RAP2 yet. The test sequences your whole genome, so your data includes it all the same.

How CDK5RAP2 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 9, with a bracket where CDK5RAP2 sits. CDK5RAP2 and 7 genes near it on chromosome 9, from 119,984,521 to 120,984,520.Chromosome 99q33.2p24.3p24.2p24.1p23p22.3p22.2p22.1p21.3p21.2p21.1p13.3p13.2p13.1p12p11.2p11.1q11q12q13q21.11q21.12q21.13q21.2q21.31q21.32q21.33q22.1q22.2q22.31q22.32q22.33q31.1q31.2q31.3q32q33.1q33.2q33.3q34.11q34.12q34.13q34.2q34.3120 Mb120.2 Mb120.4 Mb120.6 Mb120.8 MbCDK5RAP2: 120,388,875–120,580,167, reverse strandCDK5RAP2MEGF9: 120,600,671–120,714,473, reverse strandMEGF9FBXW2: 120,751,978–120,793,438, reverse strandFBXW2B3GALT9: 120,792,403–120,801,787, forward strandB3GALT9PSMD5: 120,815,496–120,843,388, reverse strandPSMD5PHF19: 120,854,422–120,894,903, reverse strandPHF19TRAF1: 120,902,393–120,931,875, reverse strandTRAF1C5: 120,932,987–121,075,195, reverse strandC5Diagram of CDK5RAP2: 38 exons on the reverse strand of chromosome 9Exon 37: 1 known disease-causing siteExon 34: 2 known disease-causing sitesExon 32: 1 known disease-causing siteExon 31: 1 known disease-causing siteExon 30: 2 known disease-causing sitesExon 28: 1 known disease-causing siteExon 27: 1 known disease-causing siteExon 26: 1 known disease-causing siteExon 25: 3 known disease-causing sitesExon 24: 2 known disease-causing sitesExon 23: 1 known disease-causing siteExon 22: 2 known disease-causing sitesExon 17: 1 known disease-causing siteExon 14: 1 known disease-causing siteExon 13: 1 known disease-causing siteExon 12: 1 known disease-causing siteExon 11: 1 known disease-causing siteExon 10: 1 known disease-causing siteExon 9: 1 known disease-causing siteExon 7: 3 known disease-causing sitesExon 5: 1 known disease-causing siteExon 4: 1 known disease-causing siteExon 38: 120,388,875–120,389,292, 418 basesExon 37: 120,389,741–120,389,787, 47 basesExon 36: 120,394,512–120,394,638, 127 basesExon 35: 120,400,742–120,400,885, 144 basesExon 34: 120,402,806–120,403,071, 266 basesExon 33: 120,404,036–120,404,113, 78 basesExon 32: 120,407,012–120,407,248, 237 basesExon 31: 120,408,347–120,408,468, 122 basesExon 30: 120,409,127–120,409,316, 190 basesExon 29: 120,411,358–120,411,474, 117 basesExon 28: 120,415,040–120,415,159, 120 basesExon 27: 120,419,788–120,419,960, 173 basesExon 26: 120,422,693–120,422,741, 49 basesExon 25: 120,437,295–120,437,527, 233 basesExon 24: 120,439,399–120,439,972, 574 basesExon 23: 120,443,620–120,443,742, 123 basesExon 22: 120,447,895–120,448,126, 232 basesExon 21: 120,453,456–120,453,873, 418 basesExon 20: 120,458,450–120,458,622, 173 basesExon 19: 120,460,572–120,460,667, 96 basesExon 18: 120,467,860–120,467,997, 138 basesExon 17: 120,470,111–120,470,220, 110 basesExon 16: 120,471,748–120,471,878, 131 basesExon 15: 120,477,350–120,477,450, 101 basesExon 14: 120,487,294–120,487,437, 144 basesExon 13: 120,491,307–120,491,477, 171 basesExon 12: 120,518,427–120,518,645, 219 basesExon 11: 120,524,986–120,525,078, 93 basesExon 10: 120,527,806–120,527,925, 120 basesExon 9: 120,528,744–120,528,797, 54 basesExon 8: 120,529,978–120,530,140, 163 basesExon 7: 120,536,372–120,536,526, 155 basesExon 6: 120,539,041–120,539,164, 124 basesExon 5: 120,545,714–120,545,790, 77 basesExon 4: 120,550,792–120,550,902, 111 basesExon 3: 120,568,321–120,568,388, 68 basesExon 2: 120,571,974–120,572,041, 68 basesExon 1: 120,579,920–120,580,167, 248 bases38353025201510515′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 6.2 kb of the gene's 191.3 kb; 5,682 of those bases code for the protein.

How a genome test reads CDK5RAP2

36

positions in CDK5RAP2 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 191.3 kb of CDK5RAP2, introns included, not only the 6.2 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). CDK5RAP2 gene: CDK5 regulatory subunit associated protein 2. Retrieved 17 October 2026, from https://dantelabs.com/genes/cdk5rap2

Vancouver

Dante Labs. CDK5RAP2 gene: CDK5 regulatory subunit associated protein 2 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/cdk5rap2

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