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Gene

NAV3

neuron navigator 3

Summary

Cytogenetic location
12q21.2
Coordinates
Chromosome 12: 77,830,894–78,213,010 (GRCh38)
Exons
40 exons across 382.1 kb
Protein
2,385 amino acids
Also known as
KIAA0938, POMFIL1
MANE Select transcript
ENST00000397909.7NM_001024383.2
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads NAV3 yet. The test sequences your whole genome, so your data includes it all the same.

How NAV3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 12, with a bracket where NAV3 sits. NAV3 and 0 genes near it on chromosome 12, from 77,448,777 to 78,595,127.Chromosome 1212q21.2p13.33p13.32p13.31p13.2p13.1p12.3p12.2p12.1p11.23p11.22p11.21p11.1q11q12q13.11q13.12q13.13q13.2q13.3q14.1q14.2q14.3q15q21.1q21.2q21.31q21.32q21.33q22q23.1q23.2q23.3q24.11q24.12q24.13q24.21q24.22q24.23q24.31q24.32q24.3377.6 Mb77.8 Mb78 Mb78.2 Mb78.4 MbNAV3: 77,830,894–78,213,010, forward strandNAV3Diagram of NAV3: 40 exons on the forward strand of chromosome 12Exon 14: 1 known disease-causing siteExon 1: 77,830,894–77,831,704, 811 basesExon 2: 77,940,319–77,940,436, 118 basesExon 3: 77,941,081–77,941,133, 53 basesExon 4: 77,966,229–77,966,301, 73 basesExon 5: 77,968,519–77,968,702, 184 basesExon 6: 77,994,803–77,994,871, 69 basesExon 7: 77,998,337–77,998,476, 140 basesExon 8: 78,006,419–78,007,445, 1,027 basesExon 9: 78,021,747–78,021,862, 116 basesExon 10: 78,049,993–78,050,101, 109 basesExon 11: 78,050,764–78,051,147, 384 basesExon 12: 78,058,996–78,059,115, 120 basesExon 13: 78,116,772–78,116,904, 133 basesExon 14: 78,118,027–78,118,297, 271 basesExon 15: 78,119,237–78,119,945, 709 basesExon 16: 78,121,940–78,122,428, 489 basesExon 17: 78,127,167–78,127,208, 42 basesExon 18: 78,128,706–78,128,866, 161 basesExon 19: 78,137,177–78,137,365, 189 basesExon 20: 78,140,282–78,140,334, 53 basesExon 21: 78,146,369–78,146,392, 24 basesExon 22: 78,148,842–78,148,919, 78 basesExon 23: 78,159,203–78,159,286, 84 basesExon 24: 78,168,755–78,168,866, 112 basesExon 25: 78,175,306–78,175,427, 122 basesExon 26: 78,176,439–78,176,459, 21 basesExon 27: 78,177,141–78,177,313, 173 basesExon 28: 78,177,620–78,177,685, 66 basesExon 29: 78,179,529–78,179,682, 154 basesExon 30: 78,180,871–78,181,045, 175 basesExon 31: 78,185,601–78,185,698, 98 basesExon 32: 78,188,248–78,188,343, 96 basesExon 33: 78,188,609–78,188,777, 169 basesExon 34: 78,189,984–78,190,219, 236 basesExon 35: 78,197,247–78,197,401, 155 basesExon 36: 78,198,605–78,198,676, 72 basesExon 37: 78,199,335–78,199,531, 197 basesExon 38: 78,200,473–78,200,591, 119 basesExon 39: 78,204,935–78,205,138, 204 basesExon 40: 78,210,398–78,213,010, 2,613 bases1102030405′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 10.2 kb of the gene's 382.1 kb; 7,158 of those bases code for the protein.

How a genome test reads NAV3

1

position in NAV3 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 382.1 kb of NAV3, introns included, not only the 10.2 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). NAV3 gene: neuron navigator 3. Retrieved 17 October 2026, from https://dantelabs.com/genes/nav3

Vancouver

Dante Labs. NAV3 gene: neuron navigator 3 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/nav3

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