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Gene

ATP6V0C

ATPase H+ transporting V0 subunit c

Summary

Cytogenetic location
16p13.3
Coordinates
Chromosome 16: 2,513,952–2,520,218 (GRCh38)
Exons
3 exons across 6.3 kb
Protein
155 amino acids
Also known as
VATL, Vma3
Previous symbols
ATPL, ATP6C, ATP6L
MANE Select transcript
ENST00000330398.9NM_001694.4
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads ATP6V0C yet. The test sequences your whole genome, so your data includes it all the same.

How ATP6V0C is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
Chromosome 16, with a bracket where ATP6V0C sits. ATP6V0C and 43 genes near it on chromosome 16, from 2,017,085 to 3,017,084.Chromosome 1616p13.3p13.3p13.2p13.13p13.12p13.11p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q13q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.32.2 Mb2.4 Mb2.6 Mb2.8 Mb3 MbNPW: 2,009,926–2,020,755, forward strandNPWNHERF2: 2,025,356–2,039,026, forward strandNHERF2NTHL1: 2,039,814–2,047,866, reverse strandNTHL1TSC2: 2,047,345–2,089,491, forward strandTSC2PKD1: 2,088,708–2,135,898, reverse strandPKD1RAB26: 2,140,803–2,154,165, forward strandRAB26TRAF7: 2,155,692–2,178,129, forward strandTRAF7CASKIN1: 2,177,180–2,196,788, reverse strandMLST8: 2,204,248–2,209,453, forward strandBRICD5: 2,209,252–2,210,905, reverse strandPGP: 2,211,593–2,214,846, reverse strandPGPE4F1: 2,223,440–2,235,743, forward strandE4F1DNASE1L2: 2,235,816–2,238,711, forward strandDNASE1L2ECI1: 2,239,376–2,252,300, reverse strandECI1RNPS1: 2,253,116–2,268,413, reverse strandRNPS1ABCA3: 2,275,878–2,340,788, reverse strandABCA3CCNF: 2,429,394–2,458,913, forward strandCCNFTEDC2: 2,460,085–2,464,963, forward strandTEDC2NTN3: 2,471,286–2,474,145, forward strandNTN3TBC1D24: 2,475,051–2,509,671, forward strand: 2,496,032–2,520,218, forward strandATP6V0C: 2,513,952–2,520,218, forward strandATP6V0C: 2,513,965–2,527,955, forward strandAMDHD2: 2,520,340–2,531,422, forward strandAMDHD2CEMP1: 2,530,035–2,531,417, reverse strandPDPK1: 2,537,969–2,603,190, forward strandPDPK1KCTD5: 2,682,516–2,709,030, forward strandKCTD5PRSS27: 2,712,419–2,721,270, reverse strandPRSS27SRRM2: 2,752,008–2,772,538, forward strandSRRM2ELOB: 2,771,413–2,777,320, reverse strandELOBPRSS33: 2,783,926–2,787,948, reverse strandPRSS33PRSS41: 2,798,470–2,805,304, forward strandPRSS41PRSS21: 2,817,130–2,826,304, forward strandPRSS21ZG16B: 2,830,162–2,839,585, forward strandZG16BPRSS22: 2,852,728–2,858,677, reverse strandPRSS22FLYWCH2: 2,882,868–2,903,099, forward strandFLYWCH2FLYWCH1: 2,911,599–2,951,208, forward strandFLYWCH1KREMEN2: 2,963,625–2,968,380, forward strandKREMEN2PKMYT1: 2,968,024–2,980,813, reverse strandPKMYT1PAQR4: 2,969,242–2,973,484, forward strandPAQR4GREP1: 2,988,256–3,002,295, forward strandGREP1: 3,004,132–3,004,859, forward strandCLDN9: 3,012,923–3,014,505, forward strandCLDN6: 3,014,705–3,020,071, reverse strandDiagram of ATP6V0C: 3 exons on the forward strand of chromosome 16Exon 1: 1 known disease-causing siteExon 2: 2 known disease-causing sitesExon 3: 1 known disease-causing siteExon 1: 2,513,952–2,514,182, 231 basesExon 2: 2,519,218–2,519,401, 184 basesExon 3: 2,519,541–2,520,218, 678 bases1235′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.1 kb of the gene's 6.3 kb; 468 of those bases code for the protein.

Sequencing ATP6V0C

4

positions in ATP6V0C where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 6.3 kb of ATP6V0C, introns included, not only the 1.1 kb of exons.

Traits linked to ATP6V0C

The Human Phenotype Ontology lists these as features of the rare conditions ATP6V0C can cause. Each trait's page lists the other genes linked to it.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). ATP6V0C gene: ATPase H+ transporting V0 subunit c. Retrieved 17 October 2026, from https://dantelabs.com/genes/atp6v0c

Vancouver

Dante Labs. ATP6V0C gene: ATPase H+ transporting V0 subunit c [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/atp6v0c

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