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Gene

ATP11C

ATPase phospholipid transporting 11C (ATP11C blood group)

Summary

Cytogenetic location
Xq27.1
Coordinates
Chromosome X: 139,726,348–139,933,053 (GRCh38)
Exons
30 exons across 206.7 kb
Protein
1,129 amino acids
Also known as
ATPIG, ATPIQ
MANE Select transcript
ENST00000682941.1NM_001353812.2
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads ATP11C yet. The test sequences your whole genome, so your data includes it all the same.

How ATP11C is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome X, with a bracket where ATP11C sits. ATP11C and 4 genes near it on chromosome X, from 139,329,701 to 140,329,700.Chromosome XXq27.1p22.33p22.32p22.31p22.2p22.13p22.12p22.11p21.3p21.2p21.1p11.4p11.3p11.23p11.22p11.21p11.1q11.1q11.2q12q13.1q13.2q13.3q21.1q21.2q21.31q21.32q21.33q22.1q22.2q22.3q23q24q25q26.1q26.2q26.3q27.1q27.2q27.3q28139.4 Mb139.6 Mb139.8 Mb140 Mb140.2 MbF9: 139,530,731–139,568,549, forward strandF9MCF2: 139,581,770–139,708,216, reverse strandMCF2ATP11C: 139,726,348–139,933,053, reverse strandATP11CCXorf66: 139,955,728–139,965,525, reverse strandCXorf66HAPSTR2: 140,091,678–140,092,911, forward strandHAPSTR2Diagram of ATP11C: 30 exons on the reverse strand of chromosome XExon 13: 1 known disease-causing siteExon 30: 139,726,348–139,728,962, 2,615 basesExon 29: 139,731,651–139,731,755, 105 basesExon 28: 139,737,916–139,738,069, 154 basesExon 27: 139,740,991–139,741,094, 104 basesExon 26: 139,743,559–139,743,624, 66 basesExon 25: 139,745,722–139,745,857, 136 basesExon 24: 139,750,025–139,750,152, 128 basesExon 23: 139,757,808–139,757,867, 60 basesExon 22: 139,761,961–139,762,106, 146 basesExon 21: 139,763,316–139,763,418, 103 basesExon 20: 139,768,260–139,768,434, 175 basesExon 19: 139,774,690–139,774,953, 264 basesExon 18: 139,782,547–139,782,728, 182 basesExon 17: 139,783,164–139,783,267, 104 basesExon 16: 139,785,226–139,785,299, 74 basesExon 15: 139,787,173–139,787,244, 72 basesExon 14: 139,788,192–139,788,343, 152 basesExon 13: 139,789,327–139,789,488, 162 basesExon 12: 139,796,273–139,796,470, 198 basesExon 11: 139,797,176–139,797,326, 151 basesExon 10: 139,798,273–139,798,354, 82 basesExon 9: 139,798,679–139,798,743, 65 basesExon 8: 139,800,060–139,800,110, 51 basesExon 7: 139,802,236–139,802,339, 104 basesExon 6: 139,804,471–139,804,599, 129 basesExon 5: 139,814,878–139,814,985, 108 basesExon 4: 139,816,863–139,816,943, 81 basesExon 3: 139,819,338–139,819,427, 90 basesExon 2: 139,826,704–139,826,823, 120 basesExon 1: 139,932,016–139,933,053, 1,038 bases3025201510515′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 7 kb of the gene's 206.7 kb; 3,390 of those bases code for the protein.

How a genome test reads ATP11C

2

positions in ATP11C where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 206.7 kb of ATP11C, introns included, not only the 7 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). ATP11C gene: ATPase phospholipid transporting 11C (ATP11C blood group). Retrieved 17 October 2026, from https://dantelabs.com/genes/atp11c

Vancouver

Dante Labs. ATP11C gene: ATPase phospholipid transporting 11C (ATP11C blood group) [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/atp11c

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