Gene
SLC5A6
solute carrier family 5 member 6
- HGNC 11041(opens in a new tab)
- Ensembl gene ENSG00000138074(opens in a new tab)
- NCBI Gene 8884(opens in a new tab)
Summary
- Cytogenetic location
- 2p23.3
- Coordinates
- Chromosome 2: 27,199,587–27,212,268 (GRCh38)
- Exons
- 17 exons across 12.7 kb
- Protein
- 635 amino acids
- Also known as
- SMVT
- MANE Select transcript
- ENST00000310574.8NM_021095.4
- Locus type
- gene with protein product
- Very high
- Confident
- Low
- Very low
Reference genomeGRCh38hg38
Positions on gene and variant pages follow this choice, in this browser.
Read SLC5A6, and the rest of your genome, with one test.
From $449Free shipping · Results in 6–8 weeks
Get my Genome TestCurated reports relevant to this gene
No Genome Test report reads SLC5A6 yet. The test sequences your whole genome, so your data includes it all the same.
How SLC5A6 is laid out
- Coding sequence
- Untranslated region
- Intron
- Direction of transcription
- Known disease-causing sites
- Stretches short reads find hard
Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.
Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).
Nearby genes from Ensembl release 116, on GRCh38.
Exons make up 3.2 kb of the gene's 12.7 kb; 1,908 of those bases code for the protein.
How a genome test reads SLC5A6
14
positions in SLC5A6 where ClinVar classes a change as pathogenic or likely pathogenic
None of them falls in a region short reads find hard.
A whole genome covers all 12.7 kb of SLC5A6, introns included, not only the 3.2 kb of exons.
Traits linked to SLC5A6
The Human Phenotype Ontology lists these as features of the rare conditions SLC5A6 can cause. Each trait's page lists the other genes linked to it.
External links
Gene records
Transcript
Protein
Where this comes from
- HGNC: the gene's symbol, name, other symbols and location.
- MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
- ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
- The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
- Data release 2026.10.16-c6eea6bf.
Cite this page
Dante Labs. (n.d.). SLC5A6 gene: solute carrier family 5 member 6. Retrieved 16 October 2026, from https://dantelabs.com/genes/slc5a6
Dante Labs. SLC5A6 gene: solute carrier family 5 member 6 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/slc5a6
One test. A lifetime of answers.
From $449Free shipping · Results in 6–8 weeks