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Gene

HKDC1

hexokinase domain containing 1

Summary

Cytogenetic location
10q22.1
Coordinates
Chromosome 10: 69,220,332–69,267,552 (GRCh38)
Exons
18 exons across 47.2 kb
Protein
917 amino acids
Also known as
FLJ37767, FLJ22761
MANE Select transcript
ENST00000354624.6NM_025130.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads HKDC1 yet. The test sequences your whole genome, so your data includes it all the same.

How HKDC1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 10, with a bracket where HKDC1 sits. HKDC1 and 13 genes near it on chromosome 10, from 68,743,942 to 69,743,941.Chromosome 1010q22.1p15.3p15.2p15.1p14p13p12.33p12.32p12.31p12.2p12.1p11.23p11.22p11.21p11.1q11.1q11.21q11.22q11.23q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.31q23.32q23.33q24.1q24.2q24.31q24.32q24.33q25.1q25.2q25.3q26.11q26.12q26.13q26.2q26.368.8 Mb69 Mb69.2 Mb69.4 Mb69.6 MbCCAR1: 68,721,012–68,793,908, forward strandCCAR1STOX1: 68,827,199–68,895,448, forward strandSTOX1DDX50: 68,901,199–68,947,348, forward strandDDX50DDX21: 68,956,135–68,985,417, forward strandDDX21KIFBP: 68,988,732–69,043,544, forward strandKIFBPSRGN: 69,087,579–69,105,696, forward strandSRGNVPS26A: 69,123,512–69,174,412, forward strandVPS26ASUPV3L1: 69,180,234–69,209,108, forward strandSUPV3L1HKDC1: 69,220,332–69,267,552, forward strandHKDC1HK1: 69,269,984–69,403,497, forward strandHK1TACR2: 69,402,885–69,416,923, reverse strandTACR2TSPAN15: 69,451,150–69,507,676, forward strandTSPAN15NEUROG3: 69,571,485–69,573,511, reverse strandNEUROG3FAM241B: 69,630,228–69,633,614, forward strandFAM241BDiagram of HKDC1: 18 exons on the forward strand of chromosome 10Exon 2: 1 known disease-causing siteExon 3: 1 known disease-causing siteExon 9: 1 known disease-causing siteExon 13: 1 known disease-causing siteExon 1: 69,220,332–69,220,498, 167 basesExon 2: 69,227,207–69,227,369, 163 basesExon 3: 69,232,764–69,232,912, 149 basesExon 4: 69,233,014–69,233,133, 120 basesExon 5: 69,239,042–69,239,137, 96 basesExon 6: 69,240,652–69,240,751, 100 basesExon 7: 69,243,182–69,243,365, 184 basesExon 8: 69,246,079–69,246,234, 156 basesExon 9: 69,247,360–69,247,593, 234 basesExon 10: 69,248,424–69,248,728, 305 basesExon 11: 69,250,290–69,250,435, 146 basesExon 12: 69,250,533–69,250,652, 120 basesExon 13: 69,257,036–69,257,131, 96 basesExon 14: 69,257,327–69,257,426, 100 basesExon 15: 69,258,776–69,258,959, 184 basesExon 16: 69,261,139–69,261,294, 156 basesExon 17: 69,265,585–69,265,818, 234 basesExon 18: 69,266,610–69,267,552, 943 bases1246810121416185′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.7 kb of the gene's 47.2 kb; 2,754 of those bases code for the protein.

How a genome test reads HKDC1

5

positions in HKDC1 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 47.2 kb of HKDC1, introns included, not only the 3.7 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). HKDC1 gene: hexokinase domain containing 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/hkdc1

Vancouver

Dante Labs. HKDC1 gene: hexokinase domain containing 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/hkdc1

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