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Gene

NOVA2

NOVA alternative splicing regulator 2

Summary

Cytogenetic location
19q13.32
Coordinates
Chromosome 19: 45,933,734–45,973,865 (GRCh38)
Exons
4 exons across 40.1 kb
Protein
492 amino acids
Also known as
ANOVA, NOVA-2
Previous symbols
NOVA3
MANE Select transcript
ENST00000263257.6NM_002516.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads NOVA2 yet. The test sequences your whole genome, so your data includes it all the same.

How NOVA2 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 19, with a bracket where NOVA2 sits. NOVA2 and 33 genes near it on chromosome 19, from 45,453,800 to 46,453,799.Chromosome 1919q13.32p13.3p13.2p13.13p13.12p13.11p12p11q11q12q13.11q13.12q13.13q13.2q13.31q13.32q13.33q13.41q13.42q13.4345.6 Mb45.8 Mb46 Mb46.2 Mb46.4 MbERCC1: 45,407,333–45,479,055, reverse strandERCC1FOSB: 45,467,989–45,475,179, forward strandFOSBRTN2: 45,485,292–45,497,055, reverse strandRTN2PPM1N: 45,488,777–45,503,129, forward strandPPM1NVASP: 45,506,579–45,527,839, forward strandVASPOPA3: 45,527,767–45,602,212, reverse strandOPA3GPR4: 45,588,565–45,602,556, reverse strandGPR4EML2: 45,606,994–45,645,617, reverse strandEML2GIPR: 45,668,207–45,683,722, forward strandGIPRSNRPD2: 45,677,907–45,692,569, reverse strandSNRPD2QPCTL: 45,692,403–45,703,989, forward strandQPCTLFBXO46: 45,710,624–45,730,931, reverse strandFBXO46MEIOSIN: 45,733,439–45,764,541, forward strandSIX5: 45,764,767–45,769,252, reverse strandDMPK: 45,769,709–45,782,794, reverse strandDMPK: 45,779,437–45,785,973, reverse strandDMWD: 45,782,944–45,792,949, reverse strandDMWDRSPH6A: 45,795,713–45,815,308, reverse strandRSPH6ASYMPK: 45,815,410–45,866,862, reverse strandSYMPKFOXA3: 45,863,989–45,873,798, forward strandFOXA3IRF2BP1: 45,883,608–45,886,141, reverse strandIRF2BP1MYPOP: 45,890,020–45,902,808, reverse strandMYPOPNANOS2: 45,913,214–45,914,778, reverse strandNANOS2NOVA2: 45,933,734–45,973,865, reverse strandNOVA2CCDC61: 45,995,444–46,021,318, forward strandCCDC61PGLYRP1: 46,019,153–46,023,367, reverse strandPGLYRP1IGFL4: 46,039,182–46,077,118, reverse strandIGFL4IGFL2: 46,079,126–46,161,298, forward strandIGFL2IGFL3: 46,120,067–46,124,698, reverse strandIGFL3IGFL1: 46,229,732–46,231,243, forward strandIGFL1HIF3A: 46,297,026–46,343,433, forward strandHIF3APPP5C: 46,346,994–46,393,000, forward strandPPP5CCCDC8: 46,410,329–46,413,564, reverse strandCCDC8PNMA8C: 46,424,697–46,428,936, reverse strandPNMA8CDiagram of NOVA2: 4 exons on the reverse strand of chromosome 19Exon 4: 3 known disease-causing sitesExon 4: 45,933,734–45,940,945, 7,212 basesExon 3: 45,953,780–45,953,946, 167 basesExon 2: 45,961,010–45,961,153, 144 basesExon 1: 45,973,267–45,973,865, 599 bases43215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 8.1 kb of the gene's 40.1 kb; 1,479 of those bases code for the protein.

How a genome test reads NOVA2

3

positions in NOVA2 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 40.1 kb of NOVA2, introns included, not only the 8.1 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). NOVA2 gene: NOVA alternative splicing regulator 2. Retrieved 16 October 2026, from https://dantelabs.com/genes/nova2

Vancouver

Dante Labs. NOVA2 gene: NOVA alternative splicing regulator 2 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/nova2

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