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Gene

CAPRIN1

cell cycle associated protein 1

Summary

Cytogenetic location
11p13
Coordinates
Chromosome 11: 34,051,731–34,102,610 (GRCh38)
Exons
19 exons across 50.9 kb
Protein
709 amino acids
Also known as
caprin-1, RNG105
Previous symbols
M11S1, GPIAP1
MANE Select transcript
ENST00000341394.9NM_005898.5
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads CAPRIN1 yet. The test sequences your whole genome, so your data includes it all the same.

How CAPRIN1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 11, with a bracket where CAPRIN1 sits. CAPRIN1 and 10 genes near it on chromosome 11, from 33,577,171 to 34,577,170.Chromosome 1111p13p15.5p15.4p15.3p15.2p15.1p14.3p14.2p14.1p13p12p11.2p11.12p11.11q11q12.1q12.2q12.3q13.1q13.2q13.3q13.4q13.5q14.1q14.2q14.3q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q2533.6 Mb33.8 Mb34 Mb34.2 Mb34.4 MbKIAA1549L: 33,376,078–33,674,102, forward strandKIAA1549L: 33,698,261–33,722,467, reverse strandC11orf91: 33,698,261–33,700,826, reverse strandC11orf91CD59: 33,703,010–33,737,293, reverse strandCD59FBXO3: 33,739,834–33,774,543, reverse strandFBXO3LMO2: 33,858,563–33,892,076, reverse strandLMO2CAPRIN1: 34,051,731–34,102,610, forward strandCAPRIN1NAT10: 34,105,583–34,147,670, forward strandNAT10ABTB2: 34,150,987–34,358,043, reverse strandABTB2CAT: 34,438,709–34,472,061, forward strandCATELF5: 34,478,791–34,525,193, reverse strandELF5Diagram of CAPRIN1: 19 exons on the forward strand of chromosome 11Exon 2: 1 known disease-causing siteExon 5: 1 known disease-causing siteExon 8: 1 known disease-causing siteExon 10: 2 known disease-causing sitesExon 13: 1 known disease-causing siteExon 14: 2 known disease-causing sitesExon 15: 2 known disease-causing sitesExon 16: 1 known disease-causing siteExon 1: 34,051,731–34,051,871, 141 basesExon 2: 34,052,421–34,052,636, 216 basesExon 3: 34,071,726–34,071,788, 63 basesExon 4: 34,071,901–34,071,987, 87 basesExon 5: 34,076,236–34,076,474, 239 basesExon 6: 34,076,560–34,076,642, 83 basesExon 7: 34,079,628–34,079,765, 138 basesExon 8: 34,082,825–34,082,877, 53 basesExon 9: 34,082,955–34,083,041, 87 basesExon 10: 34,086,064–34,086,219, 156 basesExon 11: 34,086,305–34,086,413, 109 basesExon 12: 34,089,395–34,089,456, 62 basesExon 13: 34,090,179–34,090,289, 111 basesExon 14: 34,090,529–34,090,678, 150 basesExon 15: 34,091,906–34,092,056, 151 basesExon 16: 34,096,479–34,096,673, 195 basesExon 17: 34,097,196–34,097,296, 101 basesExon 18: 34,097,698–34,097,761, 64 basesExon 19: 34,099,303–34,102,610, 3,308 bases151015195′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 5.5 kb of the gene's 50.9 kb; 2,130 of those bases code for the protein.

How a genome test reads CAPRIN1

12

positions in CAPRIN1 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 50.9 kb of CAPRIN1, introns included, not only the 5.5 kb of exons.

Traits linked to CAPRIN1

The Human Phenotype Ontology lists these as features of the rare conditions CAPRIN1 can cause. Each trait's page lists the other genes linked to it.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). CAPRIN1 gene: cell cycle associated protein 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/caprin1

Vancouver

Dante Labs. CAPRIN1 gene: cell cycle associated protein 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/caprin1

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