Gene
BRAF
B-Raf proto-oncogene, serine/threonine kinase
- HGNC 1097↗(opens in a new tab)
- Ensembl gene ENSG00000157764↗(opens in a new tab)
- NCBI Gene 673↗(opens in a new tab)
Summary
- Cytogenetic location
- 7q34
- Coordinates
- Chromosome 7: 140,730,665–140,924,929 (GRCh38)
- Exons
- 18 exons across 194.3 kb
- Protein
- 766 amino acids, 84.4 kDa
- Also known as
- BRAF1, BRAF-1
- MANE Select transcript
- ENST00000646891.2NM_004333.6
- Locus type
- Protein-coding
- Very high
- Confident
- Low
- Very low
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Get my Genome TestCurated reports relevant to this gene
Noonan Syndrome
- Autosomal dominant
Noonan Syndrome (NS) is characterized by short stature, typical facial dysmorphism and congenital heart defects.
- ClinGen rates the link moderate
- 4 GenCC submitters rate it definitive or strong
▶Actionability
Cardiac surveillance, developmental support, growth hormone therapy, genetic counseling, MEK inhibitor trials
- Noonan Syndrome and Noonan-Related Syndromes
A group of RAS pathway conditions, including Noonan, Costello, cardiofaciocutaneous and Legius syndromes, with variable heart defects, short stature and distinctive facial features.
- ClinGen rates the link definitive
- 6 GenCC submitters rate it definitive or strong
▶Actionability
Knowing about it supports heart, growth and developmental assessment.
Broader groupings
Hypertrophic Cardiomyopathy
- Autosomal dominant
One of 62 genes linked to it
A condition in which the myocardium is hypertrophied without an obvious cause. The hypertrophy is generally asymmetric and may be associated with obstruction of the ventricular outflow tract.
- ClinGen rates the link definitive
- 6 GenCC submitters rate it definitive or strong
▶Actionability
Beta-blockers, non-dihydropyridine calcium channel blockers, activity restriction, genetic counseling
How BRAF is laid out
- Coding sequence
- Untranslated region
- Intron
- Direction of transcription
- Known disease-causing sites
- Stretches short reads find hard
- Variants with a page
Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.
Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).
Nearby genes from Ensembl release 116, on GRCh38.
Exons make up 6.5 kb of the gene's 194.3 kb; 2,301 of those bases code for the protein.
Sequencing BRAF
29Moderate
How hard BRAF is to sequence with short reads, out of 100
0 · Easy100 · Hard
Some of BRAF's exons sit where short reads can miss or misplace a change.
What adds to it: the share of BRAF's exons in each kind of hard region
- MappabilityStretches where 100 or 250 bp reads cannot be placed uniquely, so a call there may be missing or wrong. On its own, a gene wholly in this kind of region would score 100.3.9%
- HomologySegmental duplications: copies elsewhere in the genome, such as paralogues and pseudogenes, at 90% identity or more. On its own, a gene wholly in this kind of region would score 60.38%
- Shared with chrYThe pseudoautosomal regions and the X-transposed region, where chrX and chrY carry the same or nearly the same sequence, so a read from one may be placed on the other. On its own, a gene wholly in this kind of region would score 60.0%
- Reference coverageGaps in the reference assembly nearby, where there is no sequence for reads to align to. On its own, a gene wholly in this kind of region would score 50.0%
- RepeatsTandem repeats and runs of one base, which reads slip on and may not span. On its own, a gene wholly in this kind of region would score 30.6%
- GC contentWindows under 25% or over 65% G and C, which library preparation covers thinly. On its own, a gene wholly in this kind of region would score 20.17%
A Dante Labs score from our own research, built on NIST's Genome in a Bottle maps of hard-to-sequence regions.How it's scoredEach bar is the share of BRAF's exon bases in that kind of difficult region. Any one kind can make a gene hard on its own, and each further kind adds less: 0 when no base is in any, 100 when every base is where reads cannot be placed uniquely.
78
positions in BRAF where ClinVar classes a change as pathogenic or likely pathogenic
4 of them (5.1%) fall in regions short reads find hard.
- Low mappabilityRegions where 100 bp or 250 bp reads cannot be placed uniquely. (1 site)
- Segmental duplicationsCopies of at least 1 kb sharing at least 90% identity with another part of the genome (paralogues, pseudogenes); reads may align to the wrong copy. (3 sites)
A whole genome covers all 194.3 kb of BRAF, introns included, not only the 6.5 kb of exons.
Variants with a page (10)
The BRAF variants with a page here, most review stars first. Each page describes ClinVar's public record of the variant, never a result.
| Variant | HGVS c. | Exon or intron | Position (GRCh38) | ClinVar classification | Review status |
|---|---|---|---|---|---|
| A246P | c.736G>C | Exon 6 | 140,801,536 | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| c.735A>T | Exon 6 | 140,801,537 | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel | |
| c.739T>C | Exon 6 | 140,801,533 | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel | |
| F247L | c.741T>G | Exon 6 | 140,801,531 | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| F247S | c.740T>C | Exon 6 | 140,801,532 | Likely pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| F247V | c.739T>G | Exon 6 | 140,801,533 | Likely pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| L245F | c.735A>C | Exon 6 | 140,801,537 | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| N581D | c.1741A>G | Exon 14 | 140,754,187 | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| Q257R | c.770A>G | Exon 6 | 140,801,502 | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| T244P | c.730A>C | Exon 6 | 140,801,542 | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
ClinVar pathogenic variants (108)
The BRAF variants ClinVar classifies pathogenic or likely pathogenic for any condition, reviewed by at least one submitter with criteria, and the most reviewed of them. It is ClinVar's public record of the gene, never a result.
- Pathogenic 66
- Pathogenic/likely pathogenic 4
- Likely pathogenic 38
| Variant | Conditions | ClinVar classification | Review status |
|---|---|---|---|
| NM_004333.6(BRAF):c.1799T>G (p.Val600Gly) | RASopathy | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1796C>G (p.Thr599Arg) | RASopathy | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1796C>T (p.Thr599Ile) | RASopathy | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1787G>T (p.Gly596Val) | RASopathy | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1785T>G (p.Phe595Leu) | RASopathy | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1781A>T (p.Asp594Val) | RASopathy | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1741A>G (p.Asn581Asp) | cardiofaciocutaneous syndrome | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1455G>C (p.Leu485Phe) | RASopathy | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1455G>T (p.Leu485Phe) | RASopathy | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1406G>A (p.Gly469Glu) | RASopathy | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1391G>A (p.Gly464Glu) | RASopathy | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.770A>G (p.Gln257Arg) | cardiofaciocutaneous syndrome | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.741T>G (p.Phe247Leu) | Noonan syndrome and Noonan-related syndrome | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.739T>C (p.Phe247Leu) | Noonan syndrome and Noonan-related syndrome | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.736G>C (p.Ala246Pro) | cardiofaciocutaneous syndrome | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.735A>C (p.Leu245Phe) | Noonan syndrome and Noonan-related syndrome | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.735A>T (p.Leu245Phe) | Noonan syndrome and Noonan-related syndrome | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.730A>C (p.Thr244Pro) | cardiofaciocutaneous syndrome | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.722C>A (p.Thr241Lys) | RASopathy | Pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1595G>A (p.Cys532Tyr) | RASopathy | Likely pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1454T>C (p.Leu485Ser) | RASopathy | Likely pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.793G>C (p.Gly265Arg) | RASopathy | Likely pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.740T>C (p.Phe247Ser) | Noonan syndrome and Noonan-related syndrome | Likely pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.739T>G (p.Phe247Val) | Noonan syndrome and Noonan-related syndrome | Likely pathogenic | ★★★★3 stars out of 4 reviewed by expert panel |
| NM_004333.6(BRAF):c.1914T>G (p.Asp638Glu) | Noonan syndrome 7 and 4 others | Pathogenic | ★★★★2 stars out of 4 criteria provided, multiple submitters, no conflicts |
See all 108 with every other BRAF variant in ClinVar → (opens in a new tab)
Genes linked to the same conditions
- ERFETS2 repressor factorShares 3 conditions
- KRASKRas proto-oncogene, GTPaseShares 3 conditions
- LZTR1leucine zipper like post translational regulator 1Shares 3 conditions
- MAPK1mitogen-activated protein kinase 1Shares 3 conditions
- MRASmuscle RAS oncogene homologShares 3 conditions
- NRASNRAS proto-oncogene, GTPaseShares 3 conditions
- PPP1CBprotein phosphatase 1 catalytic subunit betaShares 3 conditions
- PTPN11protein tyrosine phosphatase non-receptor type 11Shares 3 conditions
- RAF1Raf-1 proto-oncogene, serine/threonine kinaseShares 3 conditions
- RIT1Ras like without CAAX 1Shares 3 conditions
- RRAS2RAS related 2Shares 3 conditions
- SHOC2SHOC2 leucine rich repeat scaffold proteinShares 3 conditions
Traits linked to BRAF
The Human Phenotype Ontology lists these as features of the rare conditions BRAF can cause. Each trait's page lists the other genes linked to it.
Abnormality of head or neck
- Big calvaria
- Broad neck
- Bulbous nose
- Coarse facial features
- Depressed nasal bridge
- Downward slanting of the opening between the eyelids
- Full lower lip
- Long philtrum
Show 51 more traits
- Long, narrow head
- Low hairline at back of neck
- Narrow forehead
- Palpebral thickening
- Prominent forehead
- Short neck
- Short nose
- Sparse eyebrow
- Webbed neck
- Abnormal eyelashes
- Absent eyebrow
- Broad opening between the eyelids
- Cystic hygroma
- Flattened bony protrusion above eyes
- Full cheeks
- High forehead
- High palate
- Little lower jaw
- Long face
- Midface retrusion
- Nasal tip, upturned
- Sparse or absent eyebrows
- Sparse scalp hair
- Thickened skin folds of neck
- Triangular face
- Abnormality of the chin
- Abnormality of the face
- Broad forehead
- Cheekbone underdevelopment
- Dark color of gums
- Decreased width of the skull
- Deep philtrum
- Eye folds
- Frontal bossing
- Full lips
- Moon face
- Sparse or absent eyelashes
- Wide nasal bridge
- Big sella turcica
- Broad head shape
- Cleft palate
- Submucous cleft hard palate
- Abnormality of the bone of the forehead
- Abnormality of the nasal bone
- Abnormal dentition
- Absent eyelashes
- Bad bite
- High, narrow palate
- Open bite
- Open mouth
- Relatively large head
Abnormality of the integument
- Curly hair
- Dry skin
- Few cafe-au-lait spots
- Hyperkeratosis
- Liver spots
- Numerous moles
- Abnormal skin pigmentation
- Beauty mark
Show 42 more traits
- Brittle hair
- Excessive sweating
- Excessive wrinkled skin
- Fine hair
- Firm lump under the skin
- Freckling
- Giant pigmented mole
- Hyperelastic skin
- Mole
- Papule
- Abnormal blistering of the skin
- Abnormal fingerprints
- Abnormal hair quantity
- Buffalo hump
- Chicken skin
- Coarse hair
- Excessive hairiness
- Generalized hyperpigmentation
- Ichthyosis
- Lack of sweating
- Lentigo maligna melanoma
- Multiple birthmarks
- Patchy darkened skin
- Plethora
- Poor fingernail formation
- Poor wound healing
- Slow-growing hair
- Sparse hair
- Stretch marks
- Thin skin
- Afro-textured hair
- Birthmark
- Cutaneous melanoma
- Excessive hair growth
- Flushing
- Itching
- Loose redundant skin
- Nevus sebaceous
- Open skin sore
- Patchy loss of skin color
- Atypical mole
- Atypical nevi in non-sun exposed areas
Abnormality of the nervous system
- Abnormal shape of hypothalamus
- Decrease in size of the outer layer of the brain due to loss of brain cells
- Degeneration of cerebrum
- Epilepsy
- Intellectual disability
- Intellectual disability, severe
- Severe global developmental delay
- Abnormal speech pattern
Show 35 more traits
- Difficulty articulating speech
- Global developmental delay
- Intracranial cystic lesion
- Autism
- Behavioral abnormality
- Can't control feelings
- Difficulty sleeping
- EEG abnormality
- Excessive daytime sleepiness
- Headache
- Motor delay
- Neurodevelopmental delay
- Cancer of early nerve cells
- Depression
- Increased appetite
- Intellectual disability, mild
- Memory impairment
- Pauses in breathing while sleeping
- Peripheral axonal neuropathy
- Pressure on spinal cord
- Psychotic episodes
- Rise in pressure inside skull
- Specific learning disability
- Spina bifida occulta
- Suicidal ideation
- Too much cerebrospinal fluid in the brain
- Coma
- Dementia
- Panic attack
- Paranoia
- Psychosis
- Aplasia/Hypoplasia of the corpus callosum
- Cognitive impairment
- Tongue thrusting
- Underdeveloped frontal lobe
Abnormality of the cardiovascular system
- Increased spleen size
- Abnormal cardiovascular system morphology
- Abnormal EKG
- Abnormal heart rate
- Abnormal heart valve morphology
- Abnormal pulmonary valve morphology
- Abnormality of lung artery
- An opening in the wall separating the top two chambers of the heart
Show 25 more traits
- Bundle branch block
- Enlarged and thickened heart muscle
- Narrowing of lung artery
- Narrowing of pulmonic valve
- Abnormal mitral valve morphology
- Abnormality of the cardiovascular system
- Abnormality of the lymphatic system
- Abnormality of the spleen
- Capillary fragility
- Collection of dilated blood vessels that forms mass
- Disease of the heart muscle
- High blood pressure
- Hole in center of heart
- Mitral valve prolapse
- Tetralogy of Fallot
- Abnormal endocardium morphology
- Aneurysm
- Disruption of blood oxygen supply to brain
- Heart attack
- Livedo reticularis
- Narrowing of aorta
- Stroke
- Hole in heart wall separating two lower heart chambers
- Patent ductus arteriosus
- Abnormal aortic valve morphology
Abnormality of the musculoskeletal system
- Delayed bone maturation
- Funnel chest
- Low muscle tone, in neonatal onset
- Scoliosis
- Shield chest
- Wide rib cage
- Abnormal deposits of calcium in the brain
- Double-Jointed
Show 19 more traits
- Generalized decreased muscle tone
- Low muscle tone
- Muscle weakness
- Pigeon chest
- Fatiguable weakness of proximal limb muscles
- High shoulder blade
- Osteoporosis
- Wasting of muscles near the body
- Abnormality of the sternum
- Compression fracture of a vertebral body
- Increased susceptibility to fractures
- Osteopenia
- Death of bone due to decreased blood supply
- Hypophosphatemic rickets
- Kyphoscoliosis
- Pectus excavatum of inferior sternum
- Spasticity and rigidity of muscles
- Superior pectus carinatum
- Synovitis
Abnormality of the eye
- Blue eyes
- Bulging eye
- Farsightedness
- Wide-set eyes
- Abnormality of the eye
- Abnormality of vision
- Drooping upper eyelid
- Abnormal visual field test
Show 16 more traits
- Bitemporal hemianopia
- Close sighted
- Cross-eyed
- Involuntary, rapid, rhythmic eye movements
- Papilledema
- Progressive visual field defects
- Slow decrease in sharpness of vision
- Cerebral visual impairment
- Optic atrophy
- Optic nerve compression
- Partial loss of field of vision
- Sudden decrease in vision
- Oculomotor apraxia
- Optic nerve dysplasia
- Progressive loss of vision
- Uveal melanoma
Abnormality of the endocrine system
- Enlarged pituitary gland
- Hypogonadotropic hypogonadism
- Hypopituitarism
- Increased circulating cortisol level
- Neoplasm of the anterior pituitary
- Paradoxical increased cortisol secretion on dexamethasone suppression test
- Pituitary corticotropic cell adenoma
- Central adrenal insufficiency
Show 9 more traits
Abnormality of the ear
- Ears rotated toward back of head
- Low-set ears
- Sensorineural hearing impairment
- Thickened helices
- Severe sensorineural hearing impairment
- Large earlobe
- Large ears
- Aplasia of the semicircular canal
Show 3 more traits
External links
Gene records
Transcript
Protein
Where this comes from
- HGNC: the gene's symbol, name, other symbols and location.
- MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
- GenCC and ClinGen, released 2026-10-21: which conditions the gene is linked to, and how strongly.
- The ACMG secondary findings list, SF v3.2.
- ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
- The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.
- The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
- Data release 2026.10.21-c791e85a.
Cite this page
Dante Labs. (n.d.). BRAF gene: B-Raf proto-oncogene, serine/threonine kinase. Retrieved 23 October 2026, from https://dantelabs.com/genes/braf
Dante Labs. BRAF gene: B-Raf proto-oncogene, serine/threonine kinase [Internet]. [cited 23 October 2026]. Available from: https://dantelabs.com/genes/braf
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