Risk score · Cancer
Lung Cancer Polygenic Risk Score
Smoking is by far the largest risk factor for lung cancer, but inherited variants also play a part, in smokers and non-smokers alike.
A risk score adds up many common variants, each with a small effect, into an estimate of genetic predisposition. It is not a diagnosis.
A polygenic score for Lung cancer
Genetic variants
- 128
Method
- Clumped lung cancer loci (35 SNP score) combined with LASSO penalized regression (93 SNP score)
Built from studies of
- European 100%
Developed in
- European 100%
Evaluated in
- European 92%, African 8%
Published
Hung RJ et al. (2021). Assessing Lung Cancer Absolute Risk Trajectory Based on a Polygenic Risk Model. Cancer Res.
References
- Poirier JG, Brennan P, McKay JD, Spitz MR, Bickeböller H, Risch A, 2015. Informed genome-wide association analysis with family history as a secondary phenotype identifies novel loci of lung cancer. Genet Epidemiol
- Weissfeld JL, Lin Y, Lin HM, Kurland BF, Wilson DO, Fuhrman CR, 2015. Lung Cancer Risk Prediction Using Common SNPs Located in GWAS-Identified Susceptibility Regions. J Thorac Oncol
- Brenner DR, Amos CI, Brhane Y, Timofeeva MN, Caporaso N, Wang Y, 2015. Identification of lung cancer histology-specific variants applying Bayesian framework variant prioritization approaches within the TRICL and ILCCO consortia. Carcinogenesis
- Kachuri L, Amos CI, McKay JD, Johansson M, Vineis P, Bueno-de-Mesquita HB, 2016. Fine mapping of chromosome 5p15.33 based on a targeted deep sequencing and high density genotyping identifies novel lung cancer susceptibility loci. Carcinogenesis
- McKay JD, Hung RJ, Han Y, Zong X, Carreras-Torres R, Christiani DC, 2017. Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes. Nat Genet
Other cancer risk scores
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