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Gene

VPS50

VPS50 subunit of EARP/GARPII complex

Summary

Cytogenetic location
7q21.2-q21.3
Coordinates
Chromosome 7: 93,232,366–93,361,123 (GRCh38)
Exons
28 exons across 128.8 kb
Protein
964 amino acids
Also known as
KIAA1861, FLJ20097, DKFZp313I2429, VPS54L
Previous symbols
CCDC132
MANE Select transcript
ENST00000305866.10NM_017667.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads VPS50 yet. The test sequences your whole genome, so your data includes it all the same.

How VPS50 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 7, with a bracket where VPS50 sits. VPS50 and 6 genes near it on chromosome 7, from 92,796,745 to 93,796,744.Chromosome 77q21.2-q21.3p22.3p22.2p22.1p21.3p21.2p21.1p15.3p15.2p15.1p14.3p14.2p14.1p13p12.3p12.2p12.1p11.2p11.1q11.1q11.21q11.22q11.23q21.11q21.12q21.13q21.2q21.3q22.1q22.2q22.3q31.1q31.2q31.31q31.32q31.33q32.1q32.2q32.3q33q34q35q36.1q36.2q36.392.8 Mb93 Mb93.2 Mb93.4 Mb93.6 MbCDK6: 92,604,921–92,837,004, reverse strandCDK6SAMD9: 93,099,513–93,118,042, reverse strandSAMD9SAMD9L: 93,130,056–93,148,410, reverse strandSAMD9LHEPACAM2: 93,188,444–93,226,559, reverse strandHEPACAM2VPS50: 93,232,366–93,361,123, forward strandVPS50CALCR: 93,424,486–93,575,738, reverse strandCALCRGNGT1: 93,591,329–93,911,265, forward strandGNGT1Diagram of VPS50: 28 exons on the forward strand of chromosome 7Exon 19: 2 known disease-causing sitesExon 1: 93,232,366–93,232,500, 135 basesExon 2: 93,239,866–93,239,934, 69 basesExon 3: 93,252,653–93,252,775, 123 basesExon 4: 93,253,860–93,253,931, 72 basesExon 5: 93,256,509–93,256,562, 54 basesExon 6: 93,257,394–93,257,464, 71 basesExon 7: 93,258,159–93,258,276, 118 basesExon 8: 93,258,357–93,258,392, 36 basesExon 9: 93,259,550–93,259,632, 83 basesExon 10: 93,271,220–93,271,262, 43 basesExon 11: 93,272,635–93,272,733, 99 basesExon 12: 93,276,165–93,276,305, 141 basesExon 13: 93,291,703–93,291,835, 133 basesExon 14: 93,294,545–93,294,636, 92 basesExon 15: 93,296,742–93,296,836, 95 basesExon 16: 93,297,145–93,297,243, 99 basesExon 17: 93,303,460–93,303,550, 91 basesExon 18: 93,305,828–93,306,004, 177 basesExon 19: 93,308,824–93,308,942, 119 basesExon 20: 93,311,166–93,311,272, 107 basesExon 21: 93,323,611–93,323,732, 122 basesExon 22: 93,334,117–93,334,197, 81 basesExon 23: 93,341,427–93,341,575, 149 basesExon 24: 93,348,711–93,348,807, 97 basesExon 25: 93,349,875–93,350,033, 159 basesExon 26: 93,353,640–93,353,761, 122 basesExon 27: 93,355,891–93,356,080, 190 basesExon 28: 93,358,317–93,361,123, 2,807 bases1510152025285′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 5.7 kb of the gene's 128.8 kb; 2,895 of those bases code for the protein.

How a genome test reads VPS50

2

positions in VPS50 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 128.8 kb of VPS50, introns included, not only the 5.7 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). VPS50 gene: VPS50 subunit of EARP/GARPII complex. Retrieved 17 October 2026, from https://dantelabs.com/genes/vps50

Vancouver

Dante Labs. VPS50 gene: VPS50 subunit of EARP/GARPII complex [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/vps50

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