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Gene

MALAT1

metastasis associated lung adenocarcinoma transcript 1

Summary

Cytogenetic location
11q13.1
Coordinates
Chromosome 11: 65,499,045–65,506,516 (GRCh38)
Exons
1 exon across 7.5 kb
Also known as
miPEP-52, PRO1073, MALAT-1, NCRNA00047, HCN, NEAT2, LINC00047, mascRNA
MANE Select transcript
ENST00000850956.1NR_002819.5
Locus type
Long non-coding RNA (lncRNA)

Curated reports relevant to this gene

No Genome Test report reads MALAT1 yet. The test sequences your whole genome, so your data includes it all the same.

How MALAT1 is laid out

  • Untranslated region
  • Intron
  • Direction of transcription
Chromosome 11, with a bracket where MALAT1 sits. MALAT1 and 51 genes near it on chromosome 11, from 65,002,781 to 66,002,780.Chromosome 1111q13.1p15.5p15.4p15.3p15.2p15.1p14.3p14.2p14.1p13p12p11.2p11.12p11.11q11q12.1q12.2q12.3q13.1q13.2q13.3q13.4q13.5q14.1q14.2q14.3q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q2565.2 Mb65.4 Mb65.6 Mb65.8 Mb66 MbARL2: 65,013,735–65,024,328, forward strandARL2-SNX15: 65,014,182–65,040,570, forward strandARL2-SNX15SNX15: 65,027,404–65,040,578, forward strandSNX15SAC3D1: 65,040,897–65,047,320, forward strandSAC3D1NAALADL1: 65,044,818–65,058,558, reverse strandNAALADL1CDCA5: 65,066,299–65,084,164, reverse strandZFPL1: 65,084,210–65,088,409, forward strandCATSPERH: 65,084,974–65,089,375, reverse strandVPS51: 65,089,324–65,111,862, forward strandTM7SF2: 65,111,845–65,116,677, forward strandZNHIT2: 65,116,403–65,117,701, reverse strandZNHIT2FAU: 65,120,182–65,122,221, reverse strandFAUSYVN1: 65,121,780–65,146,912, reverse strandSYVN1MRPL49: 65,122,183–65,127,371, forward strandMRPL49SPDYC: 65,166,137–65,173,380, forward strandSPDYCCAPN1: 65,180,566–65,212,006, forward strandCAPN1POLA2: 65,261,835–65,305,959, forward strandPOLA2: 65,261,928–65,326,543, forward strandCDC42EP2: 65,298,955–65,322,662, forward strandCDC42EP2DPF2: 65,333,792–65,354,262, forward strandDPF2TIGD3: 65,354,746–65,357,613, forward strandTIGD3SLC25A45: 65,375,186–65,384,550, reverse strandSLC25A45FRMD8: 65,386,592–65,413,526, forward strandFRMD8MALAT1: 65,499,045–65,506,516, forward strandMALAT1SCYL1: 65,525,044–65,538,711, forward strandSCYL1LTBP3: 65,538,556–65,558,930, reverse strandLTBP3ZNRD2: 65,570,459–65,574,203, forward strandZNRD2FAM89B: 65,572,349–65,574,199, forward strandFAM89BEHBP1L1: 65,575,943–65,594,089, forward strandKCNK7: 65,592,836–65,595,996, reverse strandMAP3K11: 65,597,149–65,615,382, reverse strandPCNX3: 65,615,742–65,637,441, forward strandPCNX3SIPA1: 65,638,086–65,650,930, forward strandSIPA1RELA: 65,653,599–65,663,138, reverse strandRELAKAT5: 65,711,992–65,719,604, forward strandKAT5RNASEH2C: 65,713,901–65,720,988, reverse strandRNASEH2CAP5B1: 65,772,723–65,781,708, reverse strandAP5B1OVOL1: 65,786,714–65,797,219, forward strandOVOL1CFL1: 65,823,022–65,862,026, reverse strandCFL1SNX32: 65,833,664–65,856,896, forward strandSNX32MUS81: 65,857,126–65,867,653, forward strandMUS81EFEMP2: 65,866,300–65,878,497, reverse strandEFEMP2CTSW: 65,879,809–65,883,741, forward strandFIBP: 65,883,740–65,888,532, reverse strandCCDC85B: 65,890,673–65,891,635, forward strandFOSL1: 65,892,049–65,900,573, reverse strandC11orf68: 65,916,810–65,919,137, reverse strandDRAP1: 65,919,258–65,921,565, forward strandDRAP1TSGA10IP: 65,945,480–65,960,217, forward strandTSGA10IPSART1: 65,961,681–65,980,137, forward strandSART1EIF1AD: 65,992,009–66,002,472, reverse strandEIF1ADBANF1: 66,001,832–66,004,170, forward strandBANF1Diagram of MALAT1: one exon on the forward strand of chromosome 11Exon 1: 65,499,045–65,506,516, 7,472 bases15′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 7.5 kb of the gene's 7.5 kb.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). MALAT1 gene: metastasis associated lung adenocarcinoma transcript 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/malat1

Vancouver

Dante Labs. MALAT1 gene: metastasis associated lung adenocarcinoma transcript 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/malat1

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