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Gene

CLCA4

chloride channel accessory 4

Summary

Cytogenetic location
1p22.3
Coordinates
Chromosome 1: 86,547,078–86,580,754 (GRCh38)
Exons
14 exons across 33.7 kb
Protein
919 amino acids
Also known as
CaCC2
MANE Select transcript
ENST00000370563.3NM_012128.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads CLCA4 yet. The test sequences your whole genome, so your data includes it all the same.

How CLCA4 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 1, with a bracket where CLCA4 sits. CLCA4 and 8 genes near it on chromosome 1, from 86,063,916 to 87,063,915.Chromosome 11p22.3p36.33p36.32p36.31p36.23p36.22p36.21p36.13p36.12p36.11p35.3p35.2p35.1p34.3p34.2p34.1p33p32.3p32.2p32.1p31.3p31.2p31.1p22.3p22.2p22.1p21.3p21.2p21.1p13.3p13.2p13.1p12p11.2p11.1q11q12q21.1q21.2q21.3q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q31.1q31.2q31.3q32.1q32.2q32.3q41q42.11q42.12q42.13q42.2q42.3q43q4486.2 Mb86.4 Mb86.6 Mb86.8 Mb87 MbCOL24A1: 85,728,508–86,156,943, reverse strandCOL24A1ODF2L: 86,346,824–86,396,343, reverse strandODF2LCLCA2: 86,423,483–86,456,553, forward strandCLCA2CLCA1: 86,468,368–86,501,401, forward strandCLCA1CLCA4: 86,547,078–86,580,754, forward strandCLCA4SH3GLB1: 86,704,510–86,748,184, forward strandSH3GLB1SELENOF: 86,861,214–86,914,424, reverse strandSELENOFHS2ST1: 86,914,617–87,110,761, forward strandHS2ST1: 86,993,009–87,169,204, forward strandDiagram of CLCA4: 14 exons on the forward strand of chromosome 1Exon 1: 86,547,078–86,547,278, 201 basesExon 2: 86,559,932–86,560,072, 141 basesExon 3: 86,560,211–86,560,358, 148 basesExon 4: 86,563,661–86,563,769, 109 basesExon 5: 86,565,274–86,565,451, 178 basesExon 6: 86,565,802–86,566,020, 219 basesExon 7: 86,567,424–86,567,651, 228 basesExon 8: 86,571,077–86,571,254, 178 basesExon 9: 86,572,614–86,572,720, 107 basesExon 10: 86,574,540–86,574,755, 216 basesExon 11: 86,575,332–86,575,599, 268 basesExon 12: 86,577,902–86,578,072, 171 basesExon 13: 86,579,354–86,579,587, 234 basesExon 14: 86,579,942–86,580,754, 813 bases124681012145′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.2 kb of the gene's 33.7 kb; 2,760 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.

Cite this page

APA

Dante Labs. (n.d.). CLCA4 gene: chloride channel accessory 4. Retrieved 16 October 2026, from https://dantelabs.com/genes/clca4

Vancouver

Dante Labs. CLCA4 gene: chloride channel accessory 4 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/clca4

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