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Gene

SPATA22

spermatogenesis associated 22

Summary

Cytogenetic location
17p13.2
Coordinates
Chromosome 17: 3,440,019–3,471,819 (GRCh38)
Exons
9 exons across 31.8 kb
Protein
363 amino acids
Also known as
NYD-SP20
MANE Select transcript
ENST00000572969.6NM_001170698.2
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SPATA22 yet. The test sequences your whole genome, so your data includes it all the same.

How SPATA22 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 17, with a bracket where SPATA22 sits. SPATA22 and 29 genes near it on chromosome 17, from 2,955,919 to 3,955,918.Chromosome 1717p13.2p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12q21.1q21.2q21.31q21.32q21.33q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.33 Mb3.2 Mb3.4 Mb3.6 Mb3.8 MbRAP1GAP2: 2,755,629–3,037,741, forward strandRAP1GAP2OR1D5: 3,062,669–3,063,607, reverse strandOR1D5OR1D2: 3,088,484–3,104,422, reverse strandOR1D2OR1G1: 3,126,610–3,127,551, reverse strandOR1G1OR1P1: 3,153,890–3,154,882, reverse strandOR1P1OR1A2: 3,197,519–3,198,448, forward strandOR1A2OR1A1: 3,207,539–3,218,896, forward strandOR1A1OR3A2: 3,276,177–3,386,328, reverse strandOR3A2OR3A1: 3,291,017–3,298,360, reverse strandOR3A1OR1R1: 3,385,930–3,386,874, forward strandOR1R1OR1E1: 3,397,104–3,398,410, reverse strandOR1E1OR3A3: 3,411,370–3,424,070, forward strandOR3A3OR1E2: 3,432,870–3,433,841, reverse strandOR1E2SPATA22: 3,440,019–3,471,819, reverse strandSPATA22ASPA: 3,472,374–3,503,405, forward strandASPATRPV3: 3,510,502–3,557,812, reverse strandTRPV3TRPV1: 3,565,444–3,609,880, reverse strandTRPV1: 3,585,149–3,636,249, reverse strandSHPK: 3,607,433–3,636,637, reverse strandSHPKCTNS: 3,636,446–3,663,103, forward strandCTNSTAX1BP3: 3,659,751–3,668,679, reverse strandTAX1BP3P2RX5-TAX1BP3: 3,663,063–3,696,194, reverse strandEMC6: 3,668,794–3,672,835, forward strandEMC6P2RX5: 3,669,763–3,696,398, reverse strandITGAE: 3,714,628–3,801,225, reverse strandITGAEHASPIN: 3,723,903–3,726,699, forward strandHASPINNCBP3: 3,802,158–3,846,263, reverse strandNCBP3CAMKK1: 3,860,315–3,894,891, reverse strandCAMKK1P2RX1: 3,896,592–3,916,580, reverse strandP2RX1ATP2A3: 3,923,866–3,964,499, reverse strandATP2A3Diagram of SPATA22: 9 exons on the reverse strand of chromosome 17Exon 3: 1 known disease-causing siteExon 9: 3,440,019–3,440,338, 320 basesExon 8: 3,443,174–3,443,271, 98 basesExon 7: 3,446,472–3,446,601, 130 basesExon 6: 3,448,807–3,449,149, 343 basesExon 5: 3,462,483–3,462,578, 96 basesExon 4: 3,462,707–3,462,767, 61 basesExon 3: 3,467,426–3,467,554, 129 basesExon 2: 3,469,283–3,469,398, 116 basesExon 1: 3,471,682–3,471,819, 138 bases9864215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.4 kb of the gene's 31.8 kb; 1,092 of those bases code for the protein.

How a genome test reads SPATA22

4

positions in SPATA22 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 31.8 kb of SPATA22, introns included, not only the 1.4 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). SPATA22 gene: spermatogenesis associated 22. Retrieved 17 October 2026, from https://dantelabs.com/genes/spata22

Vancouver

Dante Labs. SPATA22 gene: spermatogenesis associated 22 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/spata22

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