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Gene

PYGO2

pygopus family PHD finger 2

Summary

Cytogenetic location
1q21.3
Coordinates
Chromosome 1: 154,957,026–154,961,782 (GRCh38)
Exons
3 exons across 4.8 kb
Protein
406 amino acids
MANE Select transcript
ENST00000368457.3NM_138300.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads PYGO2 yet. The test sequences your whole genome, so your data includes it all the same.

How PYGO2 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 1, with a bracket where PYGO2 sits. PYGO2 and 38 genes near it on chromosome 1, from 154,459,404 to 155,459,403.Chromosome 11q21.3p36.33p36.32p36.31p36.23p36.22p36.21p36.13p36.12p36.11p35.3p35.2p35.1p34.3p34.2p34.1p33p32.3p32.2p32.1p31.3p31.2p31.1p22.3p22.2p22.1p21.3p21.2p21.1p13.3p13.2p13.1p12p11.2p11.1q11q12q21.1q21.2q21.3q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q31.1q31.2q31.3q32.1q32.2q32.3q41q42.11q42.12q42.13q42.2q42.3q43q44154.6 Mb154.8 Mb155 Mb155.2 Mb155.4 MbIL6R: 154,405,141–154,469,450, forward strandIL6RSHE: 154,469,637–154,502,866, reverse strandSHETDRD10: 154,501,508–154,548,147, forward strandTDRD10UBE2Q1: 154,548,550–154,559,028, reverse strandUBE2Q1CHRNB2: 154,567,771–154,580,013, forward strandCHRNB2ADAR: 154,581,695–154,628,013, reverse strandADARKCNN3: 154,697,455–154,870,340, reverse strandKCNN3PMVK: 154,924,732–154,937,008, reverse strandPBXIP1: 154,944,059–154,956,451, reverse strandPBXIP1PYGO2: 154,957,026–154,961,782, reverse strandPYGO2SHC1: 154,962,284–154,974,452, reverse strandSHC1CKS1B: 154,974,641–154,979,256, forward strandCKS1BFLAD1: 154,983,311–154,993,111, forward strandLENEP: 154,993,586–154,994,315, forward strandZBTB7B: 155,002,543–155,018,525, forward strandDCST2: 155,018,520–155,033,781, reverse strandDCST2DCST1: 155,033,824–155,050,930, forward strandDCST1ADAM15: 155,050,566–155,062,780, forward strandADAM15EFNA4: 155,063,718–155,069,553, forward strandEFNA4EFNA4-EFNA3: 155,063,748–155,086,807, forward strandEFNA3: 155,078,823–155,087,538, forward strandEFNA3EFNA1: 155,127,452–155,134,899, forward strandEFNA1SLC50A1: 155,135,344–155,138,857, forward strandSLC50A1DPM3: 155,138,457–155,140,595, reverse strandDPM3KRTCAP2: 155,169,182–155,173,475, reverse strandKRTCAP2: 155,169,409–155,187,272, reverse strandTRIM46: 155,173,787–155,184,971, forward strandMUC1: 155,185,824–155,192,916, reverse strandMUC1THBS3: 155,195,584–155,209,203, reverse strandMTX1: 155,208,695–155,213,824, forward strandGBA1: 155,231,270–155,245,178, reverse strandGBA1ENTREP3: 155,247,205–155,255,824, reverse strandENTREP3SCAMP3: 155,255,979–155,262,433, reverse strandSCAMP3CLK2: 155,262,747–155,278,491, reverse strandCLK2HCN3: 155,277,328–155,289,848, forward strandHCN3PKLR: 155,289,265–155,301,443, reverse strandFDPS: 155,304,786–155,320,666, forward strandFDPSRUSC1: 155,320,739–155,331,422, forward strandRUSC1ASH1L: 155,335,268–155,563,162, reverse strandASH1LDiagram of PYGO2: 3 exons on the reverse strand of chromosome 1Exon 3: 154,957,026–154,959,846, 2,821 basesExon 2: 154,960,977–154,961,026, 50 basesExon 1: 154,961,474–154,961,782, 309 bases3215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.2 kb of the gene's 4.8 kb; 1,221 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). PYGO2 gene: pygopus family PHD finger 2. Retrieved 17 October 2026, from https://dantelabs.com/genes/pygo2

Vancouver

Dante Labs. PYGO2 gene: pygopus family PHD finger 2 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/pygo2

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