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Gene

PHF1

PHD finger protein 1

Summary

Cytogenetic location
6p21.32
Coordinates
Chromosome 6: 33,411,014–33,416,439 (GRCh38)
Exons
15 exons across 5.4 kb
Protein
567 amino acids
Also known as
MTF2L2, TDRD19C, PCL1
MANE Select transcript
ENST00000374516.8NM_024165.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads PHF1 yet. The test sequences your whole genome, so your data includes it all the same.

How PHF1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 6, with a bracket where PHF1 sits. PHF1 and 33 genes near it on chromosome 6, from 32,913,727 to 33,913,726.Chromosome 66p21.32p25.3p25.2p25.1p24.3p24.2p24.1p23p22.3p22.2p22.1p21.33p21.32p21.31p21.2p21.1p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12q13q14.1q14.2q14.3q15q16.1q16.2q16.3q21q22.1q22.2q22.31q22.32q22.33q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q26q2733 Mb33.2 Mb33.4 Mb33.6 Mb33.8 MbHLA-DMB: 32,929,338–32,941,490, reverse strandHLA-DMB: 32,937,364–32,953,122, reverse strandHLA-DMA: 32,948,613–32,969,094, reverse strandHLA-DMABRD2: 32,968,564–32,981,505, forward strandBRD2HLA-DOA: 33,004,178–33,009,617, reverse strandHLA-DOAHLA-DPA1: 33,064,569–33,080,781, reverse strandHLA-DPA1HLA-DPB1: 33,073,786–33,091,655, forward strandHLA-DPB1COL11A2: 33,162,681–33,192,802, reverse strandRXRB: 33,193,585–33,200,693, reverse strandRXRBSLC39A7: 33,200,305–33,204,439, forward strandSLC39A7HSD17B8: 33,204,631–33,206,831, forward strandHSD17B8RING1: 33,208,033–33,212,722, forward strandRING1VPS52: 33,250,272–33,272,047, reverse strandVPS52RPS18: 33,271,730–33,276,513, forward strandB3GALT4: 33,277,123–33,284,832, forward strandWDR46: 33,279,103–33,289,523, reverse strandPFDN6: 33,288,680–33,298,441, forward strandRGL2: 33,291,180–33,299,534, reverse strandTAPBP: 33,299,694–33,314,284, reverse strandZBTB22: 33,314,406–33,318,021, reverse strandZBTB22DAXX: 33,318,558–33,323,259, reverse strandDAXX: 33,321,386–33,329,286, reverse strandSMIM40: 33,323,628–33,329,279, reverse strandSMIM40KIFC1: 33,391,429–33,410,441, forward strandKIFC1PHF1: 33,411,014–33,416,439, forward strandPHF1CUTA: 33,416,442–33,418,381, reverse strandCUTASYNGAP1: 33,419,661–33,453,689, forward strandSYNGAP1ZBTB9: 33,453,970–33,457,544, forward strandZBTB9BAK1: 33,568,791–33,580,305, reverse strandBAK1ITPR3: 33,620,331–33,696,575, forward strandITPR3UQCC2: 33,690,635–33,711,748, reverse strandUQCC2IP6K3: 33,721,314–33,750,520, reverse strandIP6K3LEMD2: 33,771,202–33,789,173, reverse strandLEMD2MLN: 33,794,673–33,804,006, reverse strandMLNDiagram of PHF1: 15 exons on the forward strand of chromosome 6Exon 1: 33,411,014–33,411,215, 202 basesExon 2: 33,412,248–33,412,422, 175 basesExon 3: 33,412,508–33,412,589, 82 basesExon 4: 33,412,698–33,412,793, 96 basesExon 5: 33,413,196–33,413,296, 101 basesExon 6: 33,413,409–33,413,557, 149 basesExon 7: 33,413,736–33,413,831, 96 basesExon 8: 33,414,041–33,414,109, 69 basesExon 9: 33,414,243–33,414,366, 124 basesExon 10: 33,414,477–33,414,544, 68 basesExon 11: 33,414,725–33,414,829, 105 basesExon 12: 33,414,955–33,415,144, 190 basesExon 13: 33,415,235–33,415,329, 95 basesExon 14: 33,415,590–33,415,670, 81 basesExon 15: 33,415,810–33,416,439, 630 bases1234567891011121314155′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.3 kb of the gene's 5.4 kb; 1,704 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). PHF1 gene: PHD finger protein 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/phf1

Vancouver

Dante Labs. PHF1 gene: PHD finger protein 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/phf1

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