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Gene

PAGR1

PAXIP1 associated glutamate rich protein 1

Summary

Cytogenetic location
16p11.2
Coordinates
Chromosome 16: 29,816,152–29,822,489 (GRCh38)
Exons
3 exons across 6.3 kb
Protein
254 amino acids
Also known as
MGC4606, GAS, PA1
Previous symbols
C16orf53
MANE Select transcript
ENST00000320330.8NM_024516.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads PAGR1 yet. The test sequences your whole genome, so your data includes it all the same.

How PAGR1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
Chromosome 16, with a bracket where PAGR1 sits. PAGR1 and 39 genes near it on chromosome 16, from 29,319,321 to 30,319,320.Chromosome 1616p11.2p13.3p13.2p13.13p13.12p13.11p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q13q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.329.4 Mb29.6 Mb29.8 Mb30 Mb30.2 MbNPIPB11: 29,381,310–29,406,711, reverse strandNPIPB11BOLA2-SMG1P6: 29,443,230–29,454,651, reverse strandBOLA2: 29,453,587–29,455,012, reverse strandBOLA2SLX1B: 29,454,501–29,458,223, forward strandSLX1BSULT1A4: 29,458,993–29,464,979, forward strandSULT1A4NPIPB12: 29,483,534–29,508,595, reverse strandNPIPB12QPRT: 29,662,957–29,698,704, forward strandQPRTSPN: 29,662,957–29,670,876, forward strandSPNC16orf54: 29,742,463–29,746,079, reverse strandC16orf54ZG16: 29,760,591–29,783,885, forward strandZG16KIF22: 29,790,137–29,805,388, forward strandMAZ: 29,805,637–29,811,176, forward strandPRRT2: 29,811,382–29,815,892, forward strandPRRT2: 29,812,261–29,820,092, forward strandPAGR1: 29,816,152–29,822,489, forward strandPAGR1: 29,817,239–29,830,627, forward strandMVP: 29,820,394–29,848,039, forward strandCDIPT: 29,857,474–29,863,414, reverse strandSEZ6L2: 29,871,159–29,899,582, reverse strandSEZ6L2ASPHD1: 29,900,363–29,919,864, forward strandASPHD1KCTD13: 29,903,877–29,926,236, reverse strandKCTD13TMEM219: 29,940,885–29,973,052, forward strandTMEM219TAOK2: 29,973,675–29,992,262, forward strandTAOK2HIRIP3: 29,992,314–29,996,126, reverse strandHIRIP3INO80E: 29,994,983–30,005,794, forward strandINO80EDOC2A: 30,005,507–30,023,270, reverse strandFIMP1: 30,023,198–30,027,736, forward strandFIMP1TLCD3B: 30,024,425–30,052,978, reverse strand: 30,053,101–30,071,526, forward strandALDOA: 30,064,164–30,070,457, forward strandALDOAPPP4C: 30,075,967–30,085,391, forward strandPPP4CTBX6: 30,085,793–30,091,933, reverse strandTBX6YPEL3: 30,092,314–30,096,915, reverse strandGDPD3: 30,104,810–30,114,034, reverse strandMAPK3: 30,114,104–30,123,506, reverse strandCORO1A: 30,182,798–30,189,085, forward strandCORO1ABOLA2B: 30,192,928–30,194,306, reverse strandBOLA2BSLX1A: 30,193,875–30,197,566, forward strandSLX1ASULT1A3: 30,198,059–30,204,324, forward strandSULT1A3NPIPB13: 30,222,893–30,255,268, reverse strandDiagram of PAGR1: 3 exons on the forward strand of chromosome 16Exon 1: 29,816,152–29,817,007, 856 basesExon 2: 29,817,210–29,817,292, 83 basesExon 3: 29,819,555–29,822,489, 2,935 bases1235′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.9 kb of the gene's 6.3 kb; 765 of those bases code for the protein.

How a genome test reads PAGR1

1

position in PAGR1 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 6.3 kb of PAGR1, introns included, not only the 3.9 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). PAGR1 gene: PAXIP1 associated glutamate rich protein 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/pagr1

Vancouver

Dante Labs. PAGR1 gene: PAXIP1 associated glutamate rich protein 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/pagr1

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