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Gene

ORMDL3

ORMDL sphingolipid biosynthesis regulator 3

Summary

Cytogenetic location
17q21.1
Coordinates
Chromosome 17: 39,921,043–39,927,601 (GRCh38)
Exons
4 exons across 6.6 kb
Protein
153 amino acids
MANE Select transcript
ENST00000304046.7NM_139280.4
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads ORMDL3 yet. The test sequences your whole genome, so your data includes it all the same.

How ORMDL3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
Chromosome 17, with a bracket where ORMDL3 sits. ORMDL3 and 29 genes near it on chromosome 17, from 39,424,322 to 40,424,321.Chromosome 1717q21.1p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12q21.1q21.2q21.31q21.32q21.33q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.339.6 Mb39.8 Mb40 Mb40.2 Mb40.4 MbMED1: 39,404,253–39,451,306, reverse strandMED1CDK12: 39,461,437–39,567,559, forward strandCDK12NEUROD2: 39,603,536–39,609,777, reverse strandNEUROD2PPP1R1B: 39,626,740–39,636,626, forward strandSTARD3: 39,637,058–39,664,201, forward strandSTARD3TCAP: 39,664,990–39,666,554, forward strandTCAPPNMT: 39,667,981–39,670,484, forward strandPNMTPGAP3: 39,671,120–39,696,797, reverse strandPGAP3ERBB2: 39,687,914–39,730,426, forward strandERBB2MIEN1: 39,728,496–39,730,555, reverse strandMIEN1GRB7: 39,737,490–39,747,292, forward strandGRB7IKZF3: 39,757,715–39,864,368, reverse strandIKZF3ZPBP2: 39,868,202–39,877,896, forward strandZPBP2GSDMB: 39,904,595–39,919,854, reverse strandGSDMBORMDL3: 39,921,043–39,927,601, reverse strandORMDL3LRRC3C: 39,927,725–39,946,538, forward strandLRRC3CGSDMA: 39,953,263–39,977,875, forward strandGSDMAPSMD3: 39,980,800–39,997,960, forward strandPSMD3CSF3: 40,015,361–40,017,816, forward strandCSF3MED24: 40,019,097–40,061,215, reverse strandMED24THRA: 40,058,290–40,093,867, forward strandTHRANR1D1: 40,092,793–40,100,630, reverse strandNR1D1MSL1: 40,121,637–40,136,935, forward strandMSL1CASC3: 40,140,278–40,177,001, forward strandCASC3RAPGEFL1: 40,177,010–40,195,656, forward strandRAPGEFL1WIPF2: 40,218,743–40,284,136, forward strandWIPF2CDC6: 40,287,831–40,304,657, forward strandCDC6RARA: 40,309,165–40,357,643, forward strandRARAGJD3: 40,360,652–40,364,737, reverse strandGJD3TOP2A: 40,388,521–40,417,941, reverse strandTOP2ADiagram of ORMDL3: 4 exons on the reverse strand of chromosome 17Exon 4: 39,921,043–39,922,685, 1,643 basesExon 3: 39,923,112–39,923,263, 152 basesExon 2: 39,924,030–39,924,225, 196 basesExon 1: 39,927,484–39,927,601, 118 bases43215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.1 kb of the gene's 6.6 kb; 462 of those bases code for the protein.

Sequencing ORMDL3

1Low

How hard ORMDL3 is to sequence with short reads, out of 100

  • Mappability0%
  • Homology0%
  • Repeats0%
  • GC content6.6%
  • Reference coverage0%

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.

Cite this page

APA

Dante Labs. (n.d.). ORMDL3 gene: ORMDL sphingolipid biosynthesis regulator 3. Retrieved 17 October 2026, from https://dantelabs.com/genes/ormdl3

Vancouver

Dante Labs. ORMDL3 gene: ORMDL sphingolipid biosynthesis regulator 3 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/ormdl3

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