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Gene

CASC3

CASC3 exon junction complex subunit

Summary

Cytogenetic location
17q21.1
Coordinates
Chromosome 17: 40,140,537–40,172,171 (GRCh38)
Exons
14 exons across 31.6 kb
Protein
703 amino acids
Also known as
MLN51, BTZ
MANE Select transcript
ENST00000264645.12NM_007359.5
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads CASC3 yet. The test sequences your whole genome, so your data includes it all the same.

How CASC3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 17, with a bracket where CASC3 sits. CASC3 and 31 genes near it on chromosome 17, from 39,656,354 to 40,656,353.Chromosome 1717q21.1p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12q21.1q21.2q21.31q21.32q21.33q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.339.8 Mb40 Mb40.2 Mb40.4 Mb40.6 MbSTARD3: 39,637,058–39,664,201, forward strandTCAP: 39,664,990–39,666,554, forward strandTCAPPNMT: 39,667,981–39,670,484, forward strandPNMTPGAP3: 39,671,120–39,696,797, reverse strandPGAP3ERBB2: 39,687,914–39,730,426, forward strandERBB2MIEN1: 39,728,496–39,730,555, reverse strandMIEN1GRB7: 39,737,490–39,747,292, forward strandGRB7IKZF3: 39,757,715–39,864,368, reverse strandIKZF3ZPBP2: 39,868,202–39,877,896, forward strandZPBP2GSDMB: 39,904,595–39,919,854, reverse strandGSDMBORMDL3: 39,919,927–39,982,186, reverse strandORMDL3LRRC3C: 39,927,725–39,946,538, forward strandLRRC3CGSDMA: 39,953,263–39,977,875, forward strandGSDMAPSMD3: 39,980,800–39,997,960, forward strandPSMD3CSF3: 40,015,361–40,017,816, forward strandCSF3MED24: 40,019,097–40,061,215, reverse strandMED24THRA: 40,058,290–40,093,867, forward strandTHRANR1D1: 40,092,793–40,100,630, reverse strandNR1D1MSL1: 40,121,637–40,136,935, forward strandMSL1CASC3: 40,140,537–40,172,171, forward strandCASC3RAPGEFL1: 40,177,010–40,195,656, forward strandRAPGEFL1WIPF2: 40,218,743–40,284,136, forward strandWIPF2CDC6: 40,287,831–40,304,657, forward strandCDC6RARA: 40,309,165–40,357,643, forward strandRARAGJD3: 40,360,652–40,364,737, reverse strandGJD3TOP2A: 40,388,521–40,417,941, reverse strandTOP2AIGFBP4: 40,442,913–40,460,822, forward strandIGFBP4TNS4: 40,475,828–40,501,630, reverse strandTNS4CCR7: 40,551,081–40,565,478, reverse strandCCR7SMARCE1: 40,624,962–40,648,667, reverse strandSMARCE1: 40,627,356–40,665,141, reverse strandKRT222: 40,654,665–40,665,181, reverse strandKRT222Diagram of CASC3: 14 exons on the forward strand of chromosome 17Exon 1: 40,140,537–40,140,779, 243 basesExon 2: 40,141,207–40,141,234, 28 basesExon 3: 40,141,570–40,141,607, 38 basesExon 4: 40,161,753–40,161,911, 159 basesExon 5: 40,162,002–40,162,153, 152 basesExon 6: 40,162,725–40,162,901, 177 basesExon 7: 40,163,481–40,164,166, 686 basesExon 8: 40,166,797–40,166,861, 65 basesExon 9: 40,167,498–40,167,612, 115 basesExon 10: 40,167,850–40,167,948, 99 basesExon 11: 40,168,203–40,168,417, 215 basesExon 12: 40,169,324–40,169,446, 123 basesExon 13: 40,169,598–40,169,662, 65 basesExon 14: 40,170,447–40,172,171, 1,725 bases124681012145′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.9 kb of the gene's 31.6 kb; 2,112 of those bases code for the protein.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). CASC3 gene: CASC3 exon junction complex subunit. Retrieved 17 October 2026, from https://dantelabs.com/genes/casc3

Vancouver

Dante Labs. CASC3 gene: CASC3 exon junction complex subunit [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/casc3

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