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Gene

CA9

carbonic anhydrase 9

Summary

Cytogenetic location
9p13.3
Coordinates
Chromosome 9: 35,673,928–35,681,159 (GRCh38)
Exons
11 exons across 7.2 kb
Protein
459 amino acids
Also known as
MN, CAIX
MANE Select transcript
ENST00000378357.9NM_001216.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads CA9 yet. The test sequences your whole genome, so your data includes it all the same.

How CA9 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 9, with a bracket where CA9 sits. CA9 and 29 genes near it on chromosome 9, from 35,177,544 to 36,177,543.Chromosome 99p13.3p24.3p24.2p24.1p23p22.3p22.2p22.1p21.3p21.2p21.1p13.3p13.2p13.1p12p11.2p11.1q11q12q13q21.11q21.12q21.13q21.2q21.31q21.32q21.33q22.1q22.2q22.31q22.32q22.33q31.1q31.2q31.3q32q33.1q33.2q33.3q34.11q34.12q34.13q34.2q34.335.2 Mb35.4 Mb35.6 Mb35.8 Mb36 MbUNC13B: 35,161,829–35,405,339, forward strandUNC13BRUSC2: 35,489,670–35,562,266, forward strandRUSC2CIMIP2B: 35,561,831–35,563,914, reverse strandCIMIP2BTESK1: 35,605,235–35,610,328, forward strandTESK1CD72: 35,609,965–35,646,810, reverse strandCD72SIT1: 35,649,288–35,650,970, reverse strandRMRP: 35,657,750–35,658,019, reverse strandCCDC107: 35,658,277–35,661,524, forward strandCCDC107ARHGEF39: 35,658,874–35,675,866, reverse strandARHGEF39CA9: 35,673,928–35,681,159, forward strandCA9TPM2: 35,681,992–35,691,116, reverse strandTPM2TLN1: 35,696,925–35,732,212, reverse strandCREB3: 35,732,296–35,738,887, forward strandCREB3GBA2: 35,734,577–35,749,986, reverse strandGBA2RGP1: 35,748,613–35,759,600, forward strandRGP1MSMP: 35,752,990–35,756,613, reverse strandNPR2: 35,791,003–35,809,732, forward strandNPR2SPAG8: 35,808,045–35,812,272, reverse strandSPAG8HINT2: 35,812,960–35,815,354, reverse strandHINT2: 35,812,960–35,828,732, reverse strandTMEM8B: 35,814,451–35,865,518, forward strandFAM221B: 35,816,391–35,828,747, reverse strandOR13J1: 35,869,463–35,870,401, reverse strandOR13J1HRCT1: 35,906,202–35,907,136, forward strandHRCT1SPAAR: 35,909,488–35,937,153, forward strandSPAAROR2S2: 35,957,108–35,958,154, reverse strandOR2S2OR13C7: 36,002,909–36,003,867, reverse strandOR13C7RECK: 36,036,896–36,124,457, forward strandRECKGLIPR2: 36,136,417–36,163,913, forward strandGLIPR2CCIN: 36,165,751–36,172,384, forward strandCCINDiagram of CA9: 11 exons on the forward strand of chromosome 9Exon 1: 35,673,928–35,674,362, 435 basesExon 2: 35,675,538–35,675,567, 30 basesExon 3: 35,675,761–35,675,931, 171 basesExon 4: 35,676,064–35,676,206, 143 basesExon 5: 35,676,297–35,676,389, 93 basesExon 6: 35,677,790–35,677,856, 67 basesExon 7: 35,679,185–35,679,342, 158 basesExon 8: 35,679,854–35,679,998, 145 basesExon 9: 35,680,113–35,680,139, 27 basesExon 10: 35,680,753–35,680,834, 82 basesExon 11: 35,680,965–35,681,159, 195 bases12345678910115′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.5 kb of the gene's 7.2 kb; 1,380 of those bases code for the protein.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). CA9 gene: carbonic anhydrase 9. Retrieved 17 October 2026, from https://dantelabs.com/genes/ca9

Vancouver

Dante Labs. CA9 gene: carbonic anhydrase 9 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/ca9

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