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Gene

SLC12A4

solute carrier family 12 member 4

Summary

Cytogenetic location
16q22.1
Coordinates
Chromosome 16: 67,943,474–67,968,637 (GRCh38)
Exons
24 exons across 25.2 kb
Protein
1,085 amino acids
Also known as
KCC1
MANE Select transcript
ENST00000316341.8NM_005072.5
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SLC12A4 yet. The test sequences your whole genome, so your data includes it all the same.

How SLC12A4 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 16, with a bracket where SLC12A4 sits. SLC12A4 and 34 genes near it on chromosome 16, from 67,456,056 to 68,456,055.Chromosome 1616q22.1p13.3p13.2p13.13p13.12p13.11p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q13q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.367.6 Mb67.8 Mb68 Mb68.2 Mb68.4 MbATP6V0D1: 67,437,523–67,481,227, reverse strandATP6V0D1AGRP: 67,482,571–67,483,552, reverse strandAGRPRIPOR1: 67,518,418–67,546,788, forward strandRIPOR1CTCF: 67,561,831–67,639,189, forward strandCARMIL2: 67,644,988–67,657,569, forward strandACD: 67,657,512–67,660,810, reverse strandPARD6A: 67,660,350–67,664,266, forward strandPARD6AENKD1: 67,662,945–67,667,954, reverse strandENKD1C16orf86: 67,666,802–67,668,757, forward strandC16orf86GFOD2: 67,674,527–67,719,352, reverse strandGFOD2RANBP10: 67,723,070–67,806,563, reverse strandRANBP10TSNAXIP1: 67,806,765–67,832,148, forward strandCENPT: 67,828,157–67,847,811, reverse strandTHAP11: 67,842,320–67,844,195, forward strandTHAP11NUTF2: 67,844,369–67,872,569, forward strandNUTF2EDC4: 67,873,049–67,884,520, forward strandEDC4NRN1L: 67,884,868–67,888,855, forward strandNRN1LPSKH1: 67,893,244–67,929,676, forward strandCTRL: 67,927,640–67,932,365, reverse strand: 67,929,614–67,936,017, reverse strandPSMB10: 67,934,504–67,936,865, reverse strandPSMB10LCAT: 67,939,150–67,944,681, reverse strandLCATSLC12A4: 67,943,474–67,968,637, reverse strandSLC12A4DPEP3: 67,975,661–67,980,554, reverse strandDPEP3DPEP2: 67,987,392–68,000,624, reverse strandDPEP2DUS2: 67,987,746–68,079,344, forward strandDPEP2NB: 68,013,436–68,015,911, reverse strandDPEP2NBDDX28: 68,020,916–68,023,232, reverse strandDDX28NFATC3: 68,084,751–68,229,259, forward strandNFATC3ESRP2: 68,225,974–68,238,102, reverse strandESRP2PLA2G15: 68,245,304–68,261,063, forward strandPLA2G15SLC7A6: 68,264,173–68,301,853, forward strandSLC7A6SLC7A6OS: 68,284,498–68,310,968, reverse strandSLC7A6OSPRMT7: 68,310,916–68,360,852, forward strandPRMT7SMPD3: 68,358,327–68,448,550, reverse strandSMPD3Diagram of SLC12A4: 24 exons on the reverse strand of chromosome 16Exon 24: 67,943,474–67,944,931, 1,458 basesExon 23: 67,945,087–67,945,220, 134 basesExon 22: 67,945,369–67,945,553, 185 basesExon 21: 67,945,764–67,945,871, 108 basesExon 20: 67,945,951–67,946,082, 132 basesExon 19: 67,946,171–67,946,340, 170 basesExon 18: 67,946,438–67,946,633, 196 basesExon 17: 67,946,937–67,947,105, 169 basesExon 16: 67,947,331–67,947,435, 105 basesExon 15: 67,947,669–67,947,788, 120 basesExon 14: 67,948,061–67,948,159, 99 basesExon 13: 67,949,800–67,949,918, 119 basesExon 12: 67,950,319–67,950,493, 175 basesExon 11: 67,950,654–67,950,711, 58 basesExon 10: 67,950,962–67,951,060, 99 basesExon 9: 67,951,140–67,951,304, 165 basesExon 8: 67,951,823–67,952,037, 215 basesExon 7: 67,952,184–67,952,425, 242 basesExon 6: 67,954,643–67,954,773, 131 basesExon 5: 67,957,742–67,957,796, 55 basesExon 4: 67,957,898–67,958,044, 147 basesExon 3: 67,961,575–67,961,706, 132 basesExon 2: 67,963,465–67,963,559, 95 basesExon 1: 67,968,439–67,968,637, 199 bases24201510515′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 4.7 kb of the gene's 25.2 kb; 3,258 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). SLC12A4 gene: solute carrier family 12 member 4. Retrieved 17 October 2026, from https://dantelabs.com/genes/slc12a4

Vancouver

Dante Labs. SLC12A4 gene: solute carrier family 12 member 4 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/slc12a4

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