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Gene

SENP3

SUMO specific peptidase 3

Summary

Cytogenetic location
17p13
Coordinates
Chromosome 17: 7,561,919–7,571,969 (GRCh38)
Exons
11 exons across 10.1 kb
Protein
574 amino acids
Also known as
DKFZP586K0919, SSP3, DKFZp762A152, SMT3IP1, Ulp1
MANE Select transcript
ENST00000321337.12NM_015670.6
Locus type
gene with protein product

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads SENP3 yet. The test sequences your whole genome, so your data includes it all the same.

How SENP3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 17, with a bracket where SENP3 sits. SENP3 and 65 genes near it on chromosome 17, from 7,066,944 to 8,066,943.Chromosome 1717p13p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12q21.1q21.2q21.31q21.32q21.33q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.37.2 Mb7.4 Mb7.6 Mb7.8 Mb8 MbCLEC10A: 7,074,537–7,081,166, reverse strandCLEC10AASGR2: 7,100,166–7,116,603, reverse strandASGR2ASGR1: 7,172,427–7,179,666, reverse strandASGR1DLG4: 7,187,187–7,219,836, reverse strandDLG4ACADVL: 7,217,125–7,225,273, forward strandDVL2: 7,225,338–7,234,538, reverse strandPHF23: 7,235,029–7,239,722, reverse strandGABARAP: 7,240,008–7,242,486, reverse strand: 7,240,427–7,244,635, reverse strandCTDNEP1: 7,243,583–7,252,841, reverse strand: 7,246,829–7,262,089, reverse strandELP5: 7,250,818–7,260,165, forward strandELP5CLDN7: 7,257,359–7,264,016, reverse strandCLDN7SLC2A4: 7,281,664–7,289,241, forward strandYBX2: 7,288,253–7,294,750, reverse strandYBX2EIF5A: 7,306,944–7,312,506, forward strandGPS2: 7,309,470–7,315,564, reverse strand: 7,312,661–7,319,174, reverse strandNEURL4: 7,315,628–7,329,393, reverse strandNEURL4ACAP1: 7,332,960–7,351,478, forward strandKCTD11: 7,351,889–7,354,944, forward strandKCTD11TMEM95: 7,355,123–7,357,219, forward strandTMEM95TNK1: 7,380,534–7,389,779, forward strandTNK1PLSCR3: 7,389,727–7,397,054, reverse strandPLSCR3TMEM256-PLSCR3: 7,389,734–7,404,097, reverse strandTMEM256: 7,402,774–7,404,138, reverse strandNLGN2: 7,404,684–7,419,860, forward strandSPEM1: 7,420,323–7,421,637, forward strandSPEM2: 7,425,563–7,427,568, forward strandSPEM3: 7,428,857–7,432,820, forward strand: 7,428,861–7,436,278, forward strandTMEM102: 7,435,344–7,437,679, forward strandFGF11: 7,438,128–7,444,937, forward strandFGF11CHRNB1: 7,445,004–7,457,710, forward strandCHRNB1ZBTB4: 7,459,366–7,484,278, reverse strandZBTB4SLC35G6: 7,481,446–7,483,496, forward strandSLC35G6POLR2A: 7,484,366–7,514,616, forward strandPOLR2ATNFSF12: 7,548,508–7,557,890, forward strandTNFSF12-TNFSF13: 7,549,099–7,561,601, forward strandTNFSF13: 7,558,251–7,561,660, forward strandTNFSF13SENP3: 7,561,919–7,571,969, forward strandSENP3SENP3-EIF4A1: 7,563,287–7,578,715, forward strandSENP3-EIF4A1EIF4A1: 7,572,718–7,579,007, forward strandEIF4A1CD68: 7,579,380–7,582,515, forward strandMPDU1: 7,583,214–7,594,419, forward strandSOX15: 7,588,178–7,590,101, reverse strandFXR2: 7,591,230–7,614,916, reverse strandSHBG: 7,613,946–7,633,469, forward strandSHBGSAT2: 7,626,234–7,627,879, reverse strandATP1B2: 7,646,627–7,657,771, forward strandATP1B2TP53: 7,661,779–7,687,546, reverse strandTP53WRAP53: 7,686,071–7,703,505, forward strandWRAP53EFNB3: 7,705,172–7,711,372, forward strandEFNB3DNAH2: 7,717,728–7,833,742, forward strandDNAH2KDM6B: 7,834,193–7,854,808, forward strandKDM6BTMEM88: 7,855,057–7,856,114, forward strandTMEM88NAA38: 7,856,681–7,885,238, reverse strandNAA38CYB5D1: 7,857,696–7,862,282, forward strandCYB5D1CHD3: 7,884,787–7,912,760, forward strandCHD3RNF227: 7,913,238–7,916,377, reverse strandKCNAB3: 7,920,956–7,929,856, reverse strandKCNAB3: 7,925,931–7,930,622, reverse strandTRAPPC1: 7,930,345–7,932,123, reverse strandTRAPPC1CNTROB: 7,932,101–7,949,953, forward strandGUCY2D: 8,002,615–8,020,342, forward strandGUCY2DALOX15B: 8,039,011–8,049,134, forward strandALOX15BDiagram of SENP3: 11 exons on the forward strand of chromosome 17Exon 1: 7,561,919–7,562,263, 345 basesExon 2: 7,563,066–7,563,791, 726 basesExon 3: 7,564,625–7,564,864, 240 basesExon 4: 7,564,959–7,565,070, 112 basesExon 5: 7,565,440–7,565,587, 148 basesExon 6: 7,565,717–7,565,764, 48 basesExon 7: 7,566,927–7,567,004, 78 basesExon 8: 7,570,356–7,570,493, 138 basesExon 9: 7,570,681–7,570,764, 84 basesExon 10: 7,570,883–7,570,933, 51 basesExon 11: 7,571,373–7,571,969, 597 bases1246810115′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.6 kb of the gene's 10.1 kb; 1,725 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). SENP3 gene: SUMO specific peptidase 3. Retrieved 16 October 2026, from https://dantelabs.com/genes/senp3

Vancouver

Dante Labs. SENP3 gene: SUMO specific peptidase 3 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/senp3

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