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Gene

RIF1

replication timing regulatory factor 1

Summary

Cytogenetic location
2q23.3
Coordinates
Chromosome 2: 151,409,902–151,482,172 (GRCh38)
Exons
36 exons across 72.3 kb
Protein
2,472 amino acids
Also known as
FLJ12870, FLJ10599
MANE Select transcript
ENST00000444746.7NM_018151.5
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads RIF1 yet. The test sequences your whole genome, so your data includes it all the same.

How RIF1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 2, with a bracket where RIF1 sits. RIF1 and 7 genes near it on chromosome 2, from 150,946,037 to 151,946,036.Chromosome 22q23.3p25.3p25.2p25.1p24.3p24.2p24.1p23.3p23.2p23.1p22.3p22.2p22.1p21p16.3p16.2p16.1p15p14p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13q14.1q14.2q14.3q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q31.1q31.2q31.3q32.1q32.2q32.3q33.1q33.2q33.3q34q35q36.1q36.2q36.3q37.1q37.2q37.3151 Mb151.2 Mb151.4 Mb151.6 Mb151.8 MbRBM43: 151,247,940–151,261,870, reverse strandRBM43NMI: 151,270,467–151,289,921, reverse strandNMITNFAIP6: 151,357,585–151,380,931, forward strandTNFAIP6RIF1: 151,409,902–151,482,172, forward strandRIF1NEB: 151,485,336–151,734,515, reverse strandNEBARL5A: 151,766,233–151,828,531, reverse strandARL5A: 151,802,651–151,973,949, reverse strandCACNB4: 151,832,771–152,099,182, reverse strandCACNB4Diagram of RIF1: 36 exons on the forward strand of chromosome 2Exon 1: 151,409,902–151,410,033, 132 basesExon 2: 151,410,414–151,410,527, 114 basesExon 3: 151,411,260–151,411,338, 79 basesExon 4: 151,414,823–151,414,919, 97 basesExon 5: 151,416,561–151,416,688, 128 basesExon 6: 151,416,807–151,416,901, 95 basesExon 7: 151,420,190–151,420,379, 190 basesExon 8: 151,422,950–151,423,042, 93 basesExon 9: 151,428,784–151,428,922, 139 basesExon 10: 151,433,077–151,433,228, 152 basesExon 11: 151,435,463–151,435,580, 118 basesExon 12: 151,436,827–151,437,003, 177 basesExon 13: 151,437,241–151,437,351, 111 basesExon 14: 151,438,684–151,438,746, 63 basesExon 15: 151,440,027–151,440,127, 101 basesExon 16: 151,441,905–151,441,991, 87 basesExon 17: 151,443,259–151,443,329, 71 basesExon 18: 151,443,529–151,443,709, 181 basesExon 19: 151,445,338–151,445,445, 108 basesExon 20: 151,446,426–151,446,575, 150 basesExon 21: 151,451,606–151,451,705, 100 basesExon 22: 151,454,895–151,455,159, 265 basesExon 23: 151,456,578–151,456,620, 43 basesExon 24: 151,457,761–151,457,963, 203 basesExon 25: 151,458,811–151,458,910, 100 basesExon 26: 151,460,000–151,460,119, 120 basesExon 27: 151,461,138–151,461,289, 152 basesExon 28: 151,462,242–151,462,322, 81 basesExon 29: 151,462,412–151,462,466, 55 basesExon 30: 151,462,884–151,466,120, 3,237 basesExon 31: 151,468,000–151,468,146, 147 basesExon 32: 151,468,474–151,468,551, 78 basesExon 33: 151,468,641–151,468,756, 116 basesExon 34: 151,469,711–151,469,864, 154 basesExon 35: 151,473,964–151,474,072, 109 basesExon 36: 151,474,857–151,482,172, 7,316 bases15101520253035365′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 14.7 kb of the gene's 72.3 kb; 7,419 of those bases code for the protein.

How a genome test reads RIF1

1

position in RIF1 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 72.3 kb of RIF1, introns included, not only the 14.7 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). RIF1 gene: replication timing regulatory factor 1. Retrieved 17 October 2026, from https://dantelabs.com/genes/rif1

Vancouver

Dante Labs. RIF1 gene: replication timing regulatory factor 1 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/rif1

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