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Gene

PGA3

pepsinogen A3

Summary

Cytogenetic location
11q12.2
Coordinates
Chromosome 11: 61,203,515–61,213,098 (GRCh38)
Exons
9 exons across 9.6 kb
Protein
388 amino acids
MANE Select transcript
ENST00000325558.11NM_001079807.4
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads PGA3 yet. The test sequences your whole genome, so your data includes it all the same.

How PGA3 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 11, with a bracket where PGA3 sits. PGA3 and 29 genes near it on chromosome 11, from 60,708,307 to 61,708,306.Chromosome 1111q12.2p15.5p15.4p15.3p15.2p15.1p14.3p14.2p14.1p13p12p11.2p11.12p11.11q11q12.1q12.2q12.3q13.1q13.2q13.3q13.4q13.5q14.1q14.2q14.3q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q2560.8 Mb61 Mb61.2 Mb61.4 Mb61.6 MbMS4A8: 60,699,576–60,716,627, forward strandMS4A8MS4A18: 60,724,720–60,745,028, forward strandMS4A18MS4A15: 60,756,863–60,776,733, forward strandMS4A15MS4A10: 60,785,333–60,801,305, forward strandMS4A10CCDC86: 60,841,981–60,851,095, forward strandCCDC86PTGDR2: 60,850,933–60,855,987, reverse strandPTGDR2ZP1: 60,867,542–60,875,693, forward strandZP1PRPF19: 60,890,547–60,906,607, reverse strandPRPF19TMEM109: 60,912,521–60,923,443, forward strandTMEM109TMEM132A: 60,924,453–60,937,159, forward strandTMEM132ASLC15A3: 60,937,060–60,952,653, reverse strandSLC15A3CD6: 60,971,651–61,020,377, forward strandCD6CD5: 61,102,466–61,127,952, forward strandCD5VPS37C: 61,111,002–61,167,355, reverse strandVPS37CPGA3: 61,203,515–61,213,098, forward strandPGA3PGA4: 61,222,347–61,231,694, forward strandPGA4PGA5: 61,241,175–61,251,444, forward strandPGA5VWCE: 61,255,672–61,295,553, reverse strandVWCEDDB1: 61,299,447–61,342,596, reverse strandDDB1TKFC: 61,333,205–61,354,339, forward strandTKFCCYB561A3: 61,348,453–61,362,343, reverse strandCYB561A3TMEM138: 61,361,964–61,377,890, forward strandTMEM138TMEM216: 61,392,393–61,400,408, forward strandTMEM216CPSF7: 61,402,641–61,430,105, reverse strandCPSF7: 61,429,220–61,485,822, forward strandSDHAF2: 61,430,032–61,473,614, forward strandSDHAF2SAXO4: 61,481,120–61,490,931, forward strandSAXO4LRRC10B: 61,508,749–61,511,018, forward strandLRRC10BSYT7: 61,513,714–61,581,201, reverse strandSYT7DAGLA: 61,680,151–61,747,003, forward strandDAGLADiagram of PGA3: 9 exons on the forward strand of chromosome 11Exon 1: 61,203,515–61,203,620, 106 basesExon 2: 61,204,107–61,204,269, 163 basesExon 3: 61,206,510–61,206,627, 118 basesExon 4: 61,207,497–61,207,615, 119 basesExon 5: 61,208,291–61,208,490, 200 basesExon 6: 61,209,842–61,209,958, 117 basesExon 7: 61,211,090–61,211,234, 145 basesExon 8: 61,211,337–61,211,435, 99 basesExon 9: 61,212,553–61,213,098, 546 bases1234567895′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.6 kb of the gene's 9.6 kb; 1,167 of those bases code for the protein.

Sequencing PGA3

65High

How hard PGA3 is to sequence with short reads, out of 100

  • Mappability100%
  • Homology100%
  • Repeats0%
  • GC content2.6%
  • Reference coverage0%

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Genome in a Bottle genome stratifications, from NIST: the sequencing difficulty score.

Cite this page

APA

Dante Labs. (n.d.). PGA3 gene: pepsinogen A3. Retrieved 17 October 2026, from https://dantelabs.com/genes/pga3

Vancouver

Dante Labs. PGA3 gene: pepsinogen A3 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/pga3

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