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Gene

NCLN

nicalin

Summary

Cytogenetic location
19p13.3
Coordinates
Chromosome 19: 3,185,930–3,209,575 (GRCh38)
Exons
15 exons across 23.6 kb
Protein
563 amino acids
Also known as
NICALIN, NET59
MANE Select transcript
ENST00000246117.9NM_020170.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads NCLN yet. The test sequences your whole genome, so your data includes it all the same.

How NCLN is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 19, with a bracket where NCLN sits. NCLN and 30 genes near it on chromosome 19, from 2,697,753 to 3,697,752.Chromosome 1919p13.3p13.3p13.2p13.13p13.12p13.11p12p11q11q12q13.11q13.12q13.13q13.2q13.31q13.32q13.33q13.41q13.42q13.432.8 Mb3 Mb3.2 Mb3.4 Mb3.6 MbGNG7: 2,511,214–2,702,727, reverse strandGNG7DIRAS1: 2,714,566–2,721,438, reverse strandDIRAS1: 2,717,769–2,740,048, reverse strandSLC39A3: 2,732,204–2,740,071, reverse strandSLC39A3SGTA: 2,754,711–2,783,390, reverse strandSGTATHOP1: 2,785,444–2,815,807, forward strandTHOP1ZNF554: 2,819,853–2,836,735, forward strandZNF554ZNF555: 2,841,437–2,860,471, forward strandZNF555ZNF556: 2,867,292–2,883,445, forward strandZNF556ZNF57: 2,900,914–2,919,102, forward strandZNF57ZNF77: 2,931,137–2,944,971, reverse strandZNF77TLE6: 2,977,538–2,995,179, forward strandTLE6TLE2: 2,997,632–3,047,635, reverse strandTLE2TLE5: 3,052,908–3,063,112, reverse strandTLE5GNA11: 3,094,320–3,124,001, forward strandGNA11GNA15: 3,136,027–3,163,749, forward strandGNA15S1PR4: 3,172,346–3,180,332, forward strandS1PR4NCLN: 3,185,930–3,209,575, forward strandNCLNCELF5: 3,224,636–3,297,076, forward strandCELF5NFIC: 3,314,403–3,469,217, forward strandNFICSMIM24: 3,473,986–3,480,557, reverse strandSMIM24SMIM44: 3,482,110–3,483,441, reverse strandSMIM44DOHH: 3,490,821–3,507,203, reverse strandDOHHFZR1: 3,506,270–3,538,334, forward strandFZR1MFSD12: 3,538,261–3,574,290, reverse strandMFSD12TEKTIP1: 3,539,169–3,544,030, forward strandHMG20B: 3,572,692–3,579,088, forward strandHMG20BGIPC3: 3,585,474–3,593,541, forward strandGIPC3TBXA2R: 3,594,506–3,606,900, reverse strandTBXA2RCACTIN: 3,610,643–3,626,833, reverse strandCACTINPIP5K1C: 3,630,181–3,700,506, reverse strandPIP5K1CDiagram of NCLN: 15 exons on the forward strand of chromosome 19Exon 1: 3,185,930–3,186,214, 285 basesExon 2: 3,192,470–3,192,660, 191 basesExon 3: 3,193,284–3,193,428, 145 basesExon 4: 3,196,183–3,196,277, 95 basesExon 5: 3,198,817–3,198,897, 81 basesExon 6: 3,201,523–3,201,626, 104 basesExon 7: 3,203,756–3,203,844, 89 basesExon 8: 3,204,005–3,204,144, 140 basesExon 9: 3,204,573–3,204,751, 179 basesExon 10: 3,205,939–3,206,026, 88 basesExon 11: 3,206,152–3,206,190, 39 basesExon 12: 3,206,262–3,206,425, 164 basesExon 13: 3,207,198–3,207,251, 54 basesExon 14: 3,207,391–3,207,469, 79 basesExon 15: 3,207,629–3,209,575, 1,947 bases1510155′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.7 kb of the gene's 23.6 kb; 1,692 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). NCLN gene: nicalin. Retrieved 17 October 2026, from https://dantelabs.com/genes/ncln

Vancouver

Dante Labs. NCLN gene: nicalin [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/ncln

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