Skip to content
Use your HSA or FSA funds
Sequence your genome (opens in a new tab)

Gene

NCDN

neurochondrin

Summary

Cytogenetic location
1p34.3
Coordinates
Chromosome 1: 35,557,799–35,566,779 (GRCh38)
Exons
7 exons across 9 kb
Protein
729 amino acids
Also known as
NCDN-1, NCDN-2
MANE Select transcript
ENST00000373243.7NM_014284.3
Locus type
Protein-coding
  • Very high
  • Confident
  • Low
  • Very low

Curated reports relevant to this gene

No Genome Test report reads NCDN yet. The test sequences your whole genome, so your data includes it all the same.

How NCDN is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
Chromosome 1, with a bracket where NCDN sits. NCDN and 11 genes near it on chromosome 1, from 35,062,289 to 36,062,288.Chromosome 11p34.3p36.33p36.32p36.31p36.23p36.22p36.21p36.13p36.12p36.11p35.3p35.2p35.1p34.3p34.2p34.1p33p32.3p32.2p32.1p31.3p31.2p31.1p22.3p22.2p22.1p21.3p21.2p21.1p13.3p13.2p13.1p12p11.2p11.1q11q12q21.1q21.2q21.3q22q23.1q23.2q23.3q24.1q24.2q24.3q25.1q25.2q25.3q31.1q31.2q31.3q32.1q32.2q32.3q41q42.11q42.12q42.13q42.2q42.3q43q4435.2 Mb35.4 Mb35.6 Mb35.8 Mb36 MbZMYM1: 35,032,172–35,118,818, forward strandZMYM1SFPQ: 35,176,378–35,193,446, reverse strandSFPQZMYM4: 35,268,664–35,423,213, forward strandZMYM4KIAA0319L: 35,393,883–35,557,950, reverse strandKIAA0319LNCDN: 35,557,799–35,566,779, forward strandNCDNTFAP2E: 35,573,309–35,595,590, forward strandTFAP2EPSMB2: 35,599,541–35,641,568, reverse strandPSMB2C1orf216: 35,713,875–35,718,894, reverse strandC1orf216CLSPN: 35,720,202–35,770,002, reverse strandCLSPNAGO4: 35,807,976–35,857,890, forward strandAGO4AGO1: 35,869,808–35,930,532, forward strandAGO1AGO3: 35,930,696–36,072,500, forward strandAGO3Diagram of NCDN: 7 exons on the forward strand of chromosome 1Exon 3: 1 known disease-causing siteExon 4: 1 known disease-causing siteExon 5: 3 known disease-causing sitesExon 7: 1 known disease-causing siteExon 1: 35,557,799–35,558,223, 425 basesExon 2: 35,559,107–35,559,247, 141 basesExon 3: 35,560,326–35,561,294, 969 basesExon 4: 35,562,392–35,562,633, 242 basesExon 5: 35,563,202–35,563,426, 225 basesExon 6: 35,563,767–35,563,909, 143 basesExon 7: 35,565,227–35,566,779, 1,553 bases12345675′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.7 kb of the gene's 9 kb; 2,190 of those bases code for the protein.

Sequencing NCDN

6

positions in NCDN where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 9 kb of NCDN, introns included, not only the 3.7 kb of exons.

Traits linked to NCDN

The Human Phenotype Ontology lists these as features of the rare conditions NCDN can cause. Each trait's page lists the other genes linked to it.

External links

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.17-8666dff2.

Cite this page

APA

Dante Labs. (n.d.). NCDN gene: neurochondrin. Retrieved 17 October 2026, from https://dantelabs.com/genes/ncdn

Vancouver

Dante Labs. NCDN gene: neurochondrin [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/ncdn

One test. A lifetime of answers.

From $449Free shipping · Results in 6–8 weeks

Get my Genome Test