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Gene

ATG9A

autophagy related 9A

Summary

Cytogenetic location
2q35
Coordinates
Chromosome 2: 219,219,380–219,229,636 (GRCh38)
Exons
16 exons across 10.3 kb
Protein
839 amino acids
Also known as
FLJ22169
Previous symbols
APG9L1
MANE Select transcript
ENST00000361242.9NM_001077198.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads ATG9A yet. The test sequences your whole genome, so your data includes it all the same.

How ATG9A is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 2, with a bracket where ATG9A sits. ATG9A and 39 genes near it on chromosome 2, from 218,724,508 to 219,724,507.Chromosome 22q35p25.3p25.2p25.1p24.3p24.2p24.1p23.3p23.2p23.1p22.3p22.2p22.1p21p16.3p16.2p16.1p15p14p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13q14.1q14.2q14.3q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q31.1q31.2q31.3q32.1q32.2q32.3q33.1q33.2q33.3q34q35q36.1q36.2q36.3q37.1q37.2q37.3218.8 Mb219 Mb219.2 Mb219.4 Mb219.6 MbTTLL4: 218,710,773–218,759,724, forward strandTTLL4CYP27A1: 218,781,688–218,825,335, forward strandCYP27A1PRKAG3: 218,819,050–218,832,086, reverse strandPRKAG3WNT6: 218,859,795–218,874,233, forward strandWNT6WNT10A: 218,880,852–218,899,581, forward strandWNT10ACDK5R2: 218,959,666–218,962,155, forward strandCDK5R2FEV: 218,981,087–218,985,566, reverse strandFEVCRYBA2: 218,990,189–218,994,270, reverse strandCRYBA2CFAP65: 219,002,846–219,041,527, reverse strandCFAP65IHH: 219,054,424–219,061,064, reverse strandIHHNHEJ1: 219,069,355–219,160,869, reverse strandNHEJ1: 219,075,329–219,170,827, reverse strandSLC23A3: 219,161,465–219,170,095, reverse strandSLC23A3CNPPD1: 219,170,704–219,182,664, reverse strandRETREG2: 219,176,225–219,185,917, forward strandZFAND2B: 219,195,237–219,209,651, forward strandABCB6: 219,209,765–219,219,012, reverse strandABCB6: 219,209,772–219,222,738, reverse strandATG9A: 219,219,380–219,229,636, reverse strandATG9AANKZF1: 219,229,769–219,236,679, forward strandANKZF1GLB1L: 219,236,598–219,245,478, reverse strandSTK16: 219,245,212–219,250,339, forward strandTUBA4A: 219,249,710–219,277,902, reverse strandTUBA4B: 219,253,243–219,272,197, forward strandDNAJB2: 219,279,308–219,286,900, forward strandPTPRN: 219,289,623–219,309,648, reverse strandPTPRNRESP18: 219,327,407–219,335,552, reverse strandRESP18DNPEP: 219,360,090–219,400,022, reverse strandDNPEPDES: 219,417,474–219,426,740, forward strandDESSPEG: 219,434,471–219,493,629, forward strandSPEG: 219,491,867–219,498,244, forward strandSPEGNB: 219,496,129–219,498,287, forward strandSPEGNBGMPPA: 219,498,618–219,513,898, forward strandGMPPAASIC4: 219,514,170–219,538,772, forward strandASIC4CHPF: 219,538,949–219,543,818, reverse strandCHPFTMEM198: 219,543,130–219,550,595, forward strandOBSL1: 219,550,727–219,572,076, reverse strandOBSL1INHA: 219,569,162–219,575,711, forward strandSTK11IP: 219,595,805–219,616,452, forward strandSTK11IPSLC4A3: 219,627,011–219,641,982, forward strandSLC4A3Diagram of ATG9A: 16 exons on the reverse strand of chromosome 2Exon 16: 219,219,380–219,220,452, 1,073 basesExon 15: 219,220,747–219,220,892, 146 basesExon 14: 219,221,080–219,221,302, 223 basesExon 13: 219,222,050–219,222,167, 118 basesExon 12: 219,222,272–219,222,450, 179 basesExon 11: 219,222,645–219,222,893, 249 basesExon 10: 219,223,585–219,223,764, 180 basesExon 9: 219,223,869–219,224,022, 154 basesExon 8: 219,224,106–219,224,854, 749 basesExon 7: 219,225,071–219,225,212, 142 basesExon 6: 219,225,411–219,225,572, 162 basesExon 5: 219,226,869–219,226,933, 65 basesExon 4: 219,227,770–219,227,813, 44 basesExon 3: 219,227,922–219,228,053, 132 basesExon 2: 219,228,434–219,228,485, 52 basesExon 1: 219,229,535–219,229,636, 102 bases161514131211109876543215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.8 kb of the gene's 10.3 kb; 2,520 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). ATG9A gene: autophagy related 9A. Retrieved 17 October 2026, from https://dantelabs.com/genes/atg9a

Vancouver

Dante Labs. ATG9A gene: autophagy related 9A [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/atg9a

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