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Gene

ATG4D

autophagy related 4D cysteine peptidase

Summary

Cytogenetic location
19p13.2
Coordinates
Chromosome 19: 10,543,904–10,553,418 (GRCh38)
Exons
10 exons across 9.5 kb
Protein
474 amino acids
Also known as
APG4-D
Previous symbols
AUTL4, APG4D
MANE Select transcript
ENST00000309469.9NM_032885.6
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads ATG4D yet. The test sequences your whole genome, so your data includes it all the same.

How ATG4D is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 19, with a bracket where ATG4D sits. ATG4D and 36 genes near it on chromosome 19, from 10,048,661 to 11,048,660.Chromosome 1919p13.2p13.3p13.2p13.13p13.12p13.11p12p11q11q12q13.11q13.12q13.13q13.2q13.31q13.32q13.33q13.41q13.42q13.4310.2 Mb10.4 Mb10.6 Mb10.8 Mb11 MbSHFL: 10,086,017–10,093,252, forward strandANGPTL6: 10,092,335–10,106,612, reverse strandPPAN-P2RY11: 10,106,223–10,114,780, forward strandPPAN-P2RY11PPAN: 10,106,300–10,112,813, forward strandP2RY11: 10,111,689–10,118,085, forward strandP2RY11EIF3G: 10,115,010–10,119,951, reverse strandEIF3GDNMT1: 10,133,342–10,231,286, reverse strandDNMT1S1PR2: 10,221,433–10,231,331, reverse strandS1PR2MRPL4: 10,251,901–10,260,060, forward strandMRPL4ICAM1: 10,271,093–10,286,617, forward strandICAM4: 10,286,946–10,288,522, forward strandICAM5: 10,289,940–10,296,778, forward strandZGLP1: 10,304,803–10,309,880, reverse strandFDX2-ZGLP1: 10,305,427–10,316,009, reverse strandFDX2: 10,309,898–10,316,026, reverse strandFDX2: 10,315,471–10,320,678, reverse strandRAVER1: 10,316,212–10,333,548, reverse strandRAVER1ICAM3: 10,333,776–10,339,847, reverse strandICAM3TYK2: 10,350,528–10,380,608, reverse strandTYK2CDC37: 10,391,090–10,420,224, reverse strandCDC37PDE4A: 10,416,773–10,469,816, forward strandPDE4AKEAP1: 10,484,512–10,503,558, reverse strandKEAP1S1PR5: 10,512,742–10,517,981, reverse strandS1PR5ATG4D: 10,543,904–10,553,418, forward strandATG4DKRI1: 10,553,085–10,566,031, reverse strandKRI1CDKN2D: 10,566,460–10,569,059, reverse strandCDKN2DAP1M2: 10,569,431–10,587,317, reverse strandAP1M2SLC44A2: 10,602,457–10,644,559, forward strandSLC44A2ILF3: 10,654,261–10,692,415, forward strandILF3QTRT1: 10,701,430–10,713,747, forward strandQTRT1DNM2: 10,717,967–10,834,209, forward strandDNM2TMED1: 10,832,067–10,836,330, reverse strandTMED1C19orf38: 10,836,567–10,869,796, forward strandC19orf38CARM1: 10,871,447–10,923,081, forward strandCARM1YIPF2: 10,918,919–10,928,704, reverse strandYIPF2TIMM29: 10,928,716–10,933,535, forward strandTIMM29SMARCA4: 10,960,824–11,079,426, forward strandSMARCA4Diagram of ATG4D: 10 exons on the forward strand of chromosome 19Exon 1: 10,543,904–10,544,325, 422 basesExon 2: 10,544,783–10,544,866, 84 basesExon 3: 10,544,957–10,545,130, 174 basesExon 4: 10,546,839–10,547,115, 277 basesExon 5: 10,547,189–10,547,253, 65 basesExon 6: 10,548,904–10,549,034, 131 basesExon 7: 10,551,897–10,551,975, 79 basesExon 8: 10,552,045–10,552,121, 77 basesExon 9: 10,552,205–10,552,324, 120 basesExon 10: 10,552,885–10,553,418, 534 bases123456789105′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2 kb of the gene's 9.5 kb; 1,425 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.

Cite this page

APA

Dante Labs. (n.d.). ATG4D gene: autophagy related 4D cysteine peptidase. Retrieved 17 October 2026, from https://dantelabs.com/genes/atg4d

Vancouver

Dante Labs. ATG4D gene: autophagy related 4D cysteine peptidase [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/atg4d

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