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Gene

VPS9D1

VPS9 domain containing 1

Summary

Cytogenetic location
16q24.3
Coordinates
Chromosome 16: 89,707,134–89,720,898 (GRCh38)
Exons
15 exons across 13.8 kb
Protein
631 amino acids
Also known as
ATP-BL
Previous symbols
C16orf7
MANE Select transcript
ENST00000389386.8NM_004913.3
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads VPS9D1 yet. The test sequences your whole genome, so your data includes it all the same.

How VPS9D1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 16, with a bracket where VPS9D1 sits. VPS9D1 and 22 genes near it on chromosome 16, from 89,214,016 to 90,214,015.Chromosome 1616q24.3p13.3p13.2p13.13p13.12p13.11p12.3p12.2p12.1p11.2p11.1q11.1q11.2q12.1q12.2q13q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.389.4 Mb89.6 Mb89.8 Mb90 Mb90.2 MbZNF778: 89,217,683–89,237,141, forward strandZNF778ANKRD11: 89,267,619–89,490,706, reverse strandANKRD11: 89,317,046–89,418,292, reverse strandSPG7: 89,490,719–89,557,768, forward strandSPG7RPL13: 89,560,637–89,567,834, forward strandRPL13CPNE7: 89,575,730–89,597,247, forward strandCPNE7DPEP1: 89,613,308–89,638,456, forward strandDPEP1CHMP1A: 89,640,816–89,657,738, reverse strandCHMP1ASPATA33: 89,657,740–89,671,287, forward strandSPATA33CDK10: 89,680,737–89,696,372, forward strandCDK10SPATA2L: 89,696,357–89,701,733, reverse strandSPATA2LVPS9D1: 89,707,134–89,720,898, reverse strandVPS9D1ZNF276: 89,720,400–89,740,925, forward strandZNF276FANCA: 89,726,683–89,816,977, reverse strandFANCASPIRE2: 89,818,179–89,871,320, forward strandSPIRE2TCF25: 89,873,214–89,913,627, forward strandTCF25MC1R: 89,912,119–89,920,977, forward strandMC1R: 89,919,165–89,936,092, forward strandTUBB3: 89,921,392–89,938,761, forward strandTUBB3DEF8: 89,948,014–89,968,079, forward strandDEF8DBNDD1: 90,004,648–90,019,890, reverse strandDBNDD1DRC4: 90,019,629–90,045,369, forward strandDRC4PRDM7: 90,056,566–90,092,072, reverse strandPRDM7Diagram of VPS9D1: 15 exons on the reverse strand of chromosome 16Exon 15: 89,707,134–89,707,954, 821 basesExon 14: 89,708,427–89,708,531, 105 basesExon 13: 89,708,857–89,708,956, 100 basesExon 12: 89,709,227–89,709,435, 209 basesExon 11: 89,709,777–89,709,906, 130 basesExon 10: 89,710,586–89,711,010, 425 basesExon 9: 89,711,327–89,711,412, 86 basesExon 8: 89,711,882–89,711,969, 88 basesExon 7: 89,712,047–89,712,099, 53 basesExon 6: 89,712,460–89,712,522, 63 basesExon 5: 89,712,605–89,712,716, 112 basesExon 4: 89,716,462–89,716,624, 163 basesExon 3: 89,716,730–89,716,822, 93 basesExon 2: 89,719,027–89,719,102, 76 basesExon 1: 89,720,763–89,720,898, 136 bases15141210864215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.7 kb of the gene's 13.8 kb; 1,896 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). VPS9D1 gene: VPS9 domain containing 1. Retrieved 16 October 2026, from https://dantelabs.com/genes/vps9d1

Vancouver

Dante Labs. VPS9D1 gene: VPS9 domain containing 1 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/vps9d1

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