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Gene

USP39

ubiquitin specific peptidase 39

Summary

Cytogenetic location
2p11.2
Coordinates
Chromosome 2: 85,616,186–85,649,283 (GRCh38)
Exons
13 exons across 33.1 kb
Protein
565 amino acids
Also known as
SAD1, CGI-21, SNRNP65
MANE Select transcript
ENST00000323701.11NM_006590.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads USP39 yet. The test sequences your whole genome, so your data includes it all the same.

How USP39 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 2, with a bracket where USP39 sits. USP39 and 19 genes near it on chromosome 2, from 85,132,735 to 86,132,734.Chromosome 22p11.2p25.3p25.2p25.1p24.3p24.2p24.1p23.3p23.2p23.1p22.3p22.2p22.1p21p16.3p16.2p16.1p15p14p13.3p13.2p13.1p12p11.2p11.1q11.1q11.2q12.1q12.2q12.3q13q14.1q14.2q14.3q21.1q21.2q21.3q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q31.1q31.2q31.3q32.1q32.2q32.3q33.1q33.2q33.3q34q35q36.1q36.2q36.3q37.1q37.2q37.385.2 Mb85.4 Mb85.6 Mb85.8 Mb86 MbTCF7L1: 85,133,348–85,310,388, forward strandTCF7L1TGOLN2: 85,311,668–85,328,301, reverse strandTGOLN2RETSAT: 85,341,948–85,354,655, reverse strandRETSATELMOD3: 85,354,394–85,391,752, forward strandELMOD3CAPG: 85,388,144–85,422,017, reverse strandCAPGSH2D6: 85,418,714–85,437,029, forward strandSH2D6MAT2A: 85,539,163–85,545,281, forward strandGGCX: 85,544,720–85,561,838, reverse strandVAMP8: 85,561,562–85,582,032, forward strandVAMP5: 85,584,397–85,593,421, forward strandRNF181: 85,595,620–85,598,589, forward strandRNF181TMEM150A: 85,598,547–85,603,201, reverse strandTMEM150AC2orf68: 85,605,254–85,612,066, reverse strandC2orf68USP39: 85,616,186–85,649,283, forward strandUSP39SFTPB: 85,655,154–85,668,741, reverse strandSFTPBGNLY: 85,685,175–85,698,854, forward strandGNLYATOH8: 85,751,344–85,794,266, forward strandATOH8ST3GAL5: 85,837,120–85,905,199, reverse strandST3GAL5POLR1A: 86,020,216–86,106,155, reverse strandPOLR1APTCD3: 86,106,223–86,142,157, forward strandPTCD3Diagram of USP39: 13 exons on the forward strand of chromosome 2Exon 1: 85,616,186–85,616,463, 278 basesExon 2: 85,619,220–85,619,289, 70 basesExon 3: 85,621,485–85,621,579, 95 basesExon 4: 85,623,646–85,623,782, 137 basesExon 5: 85,625,539–85,625,691, 153 basesExon 6: 85,630,721–85,630,946, 226 basesExon 7: 85,636,053–85,636,130, 78 basesExon 8: 85,637,369–85,637,436, 68 basesExon 9: 85,639,203–85,639,391, 189 basesExon 10: 85,640,976–85,641,118, 143 basesExon 11: 85,644,948–85,645,083, 136 basesExon 12: 85,647,930–85,648,016, 87 basesExon 13: 85,648,761–85,649,283, 523 bases123456789101112135′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 2.2 kb of the gene's 33.1 kb; 1,698 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). USP39 gene: ubiquitin specific peptidase 39. Retrieved 17 October 2026, from https://dantelabs.com/genes/usp39

Vancouver

Dante Labs. USP39 gene: ubiquitin specific peptidase 39 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/usp39

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