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Gene

USHBP1

USH1 protein network component harmonin binding protein 1

Summary

Cytogenetic location
19p13.11
Coordinates
Chromosome 19: 17,249,171–17,264,745 (GRCh38)
Exons
13 exons across 15.6 kb
Protein
703 amino acids
Also known as
MCC2, AIEBP, FLJ38709
MANE Select transcript
ENST00000252597.8NM_031941.4
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads USHBP1 yet. The test sequences your whole genome, so your data includes it all the same.

How USHBP1 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Stretches short reads find hard
Chromosome 19, with a bracket where USHBP1 sits. USHBP1 and 32 genes near it on chromosome 19, from 16,756,958 to 17,756,957.Chromosome 1919p13.11p13.3p13.2p13.13p13.12p13.11p12p11q11q12q13.11q13.12q13.13q13.2q13.31q13.32q13.33q13.41q13.42q13.4316.8 Mb17 Mb17.2 Mb17.4 Mb17.6 MbNWD1: 16,719,847–16,817,963, forward strandNWD1SIN3B: 16,829,387–16,880,355, forward strandSIN3BF2RL3: 16,888,844–16,892,606, forward strandF2RL3CPAMD8: 16,892,951–17,026,982, reverse strandCPAMD8HAUS8: 17,049,729–17,075,625, reverse strandHAUS8MYO9B: 17,075,728–17,214,537, forward strandMYO9BUSE1: 17,215,337–17,220,245, forward strandUSE1OCEL1: 17,226,198–17,229,219, forward strandNR2F6: 17,229,207–17,245,953, reverse strandNR2F6: 17,235,940–17,255,448, reverse strandUSHBP1: 17,249,171–17,264,745, reverse strandUSHBP1BABAM1: 17,267,343–17,281,249, forward strandBABAM1: 17,267,418–17,282,966, forward strandANKLE1: 17,281,645–17,287,649, forward strandABHD8: 17,292,131–17,310,236, reverse strandMRPL34: 17,292,543–17,306,847, forward strandDDA1: 17,309,518–17,323,315, forward strandDDA1ANO8: 17,323,223–17,334,864, reverse strandANO8GTPBP3: 17,334,920–17,342,735, forward strandPLVAP: 17,351,450–17,377,356, reverse strandPLVAPCCDC194: 17,387,196–17,394,201, reverse strandCCDC194BST2: 17,402,933–17,407,393, reverse strandBST2MVB12A: 17,405,722–17,436,364, forward strandMVB12ATMEM221: 17,435,509–17,448,679, reverse strandTMEM221: 17,436,611–17,460,804, reverse strandNXNL1: 17,455,425–17,460,926, reverse strandNXNL1SLC27A1: 17,467,666–17,506,190, forward strandSLC27A1PGLS: 17,511,607–17,521,288, forward strandPGLSNIBAN3: 17,523,301–17,553,839, forward strandNIBAN3COLGALT1: 17,555,590–17,583,162, forward strandCOLGALT1UNC13A: 17,601,327–17,688,382, reverse strandUNC13AMAP1S: 17,719,242–17,734,515, forward strandMAP1SFCHO1: 17,747,701–17,788,572, forward strandFCHO1Diagram of USHBP1: 13 exons on the reverse strand of chromosome 19Exon 13: 17,249,171–17,250,414, 1,244 basesExon 12: 17,251,582–17,251,704, 123 basesExon 11: 17,251,911–17,252,017, 107 basesExon 10: 17,255,385–17,255,606, 222 basesExon 9: 17,256,471–17,256,720, 250 basesExon 8: 17,258,212–17,258,385, 174 basesExon 7: 17,259,289–17,259,429, 141 basesExon 6: 17,259,596–17,259,732, 137 basesExon 5: 17,259,897–17,260,022, 126 basesExon 4: 17,262,552–17,262,990, 439 basesExon 3: 17,264,002–17,264,150, 149 basesExon 2: 17,264,246–17,264,347, 102 basesExon 1: 17,264,671–17,264,745, 75 bases131210864215′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 3.3 kb of the gene's 15.6 kb; 2,112 of those bases code for the protein.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.

Cite this page

APA

Dante Labs. (n.d.). USHBP1 gene: USH1 protein network component harmonin binding protein 1. Retrieved 16 October 2026, from https://dantelabs.com/genes/ushbp1

Vancouver

Dante Labs. USHBP1 gene: USH1 protein network component harmonin binding protein 1 [Internet]. [cited 16 October 2026]. Available from: https://dantelabs.com/genes/ushbp1

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