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Gene

TRAPPC4

trafficking protein particle complex subunit 4

Summary

Cytogenetic location
11q23.3
Coordinates
Chromosome 11: 119,018,766–119,024,134 (GRCh38)
Exons
5 exons across 5.4 kb
Protein
219 amino acids
Also known as
TRS23, SBDN, PTD009
MANE Select transcript
ENST00000533632.6NM_016146.6
Locus type
gene with protein product
  • Very high
  • Confident
  • Low
  • Very low

Reference genomeGRCh38

Positions on gene and variant pages follow this choice, in this browser.

Curated reports relevant to this gene

No Genome Test report reads TRAPPC4 yet. The test sequences your whole genome, so your data includes it all the same.

How TRAPPC4 is laid out

  • Coding sequence
  • Untranslated region
  • Intron
  • Direction of transcription
  • Known disease-causing sites
  • Stretches short reads find hard
Chromosome 11, with a bracket where TRAPPC4 sits. TRAPPC4 and 33 genes near it on chromosome 11, from 118,521,450 to 119,521,449.Chromosome 1111q23.3p15.5p15.4p15.3p15.2p15.1p14.3p14.2p14.1p13p12p11.2p11.12p11.11q11q12.1q12.2q12.3q13.1q13.2q13.3q13.4q13.5q14.1q14.2q14.3q21q22.1q22.2q22.3q23.1q23.2q23.3q24.1q24.2q24.3q25118.6 Mb118.8 Mb119 Mb119.2 Mb119.4 MbKMT2A: 118,436,456–118,526,832, forward strandKMT2ATTC36: 118,527,314–118,531,197, forward strandTTC36TMEM25: 118,530,636–118,548,273, forward strandTMEM25IFT46: 118,544,381–118,572,970, reverse strandIFT46ARCN1: 118,572,384–118,603,033, forward strandARCN1PHLDB1: 118,606,396–118,658,038, forward strandPHLDB1TREH: 118,657,265–118,679,694, reverse strandTREHDDX6: 118,747,763–118,791,226, reverse strandDDX6CXCR5: 118,883,868–118,897,787, forward strandCXCR5BCL9L: 118,893,875–118,925,926, reverse strandBCL9LUPK2: 118,925,164–118,958,559, forward strandUPK2FOXR1: 118,971,623–118,981,287, forward strandCENATAC: 118,998,051–119,015,811, forward strandCENATACRPS25: 119,014,665–119,018,724, reverse strandRPS25TRAPPC4: 119,018,766–119,024,134, forward strandTRAPPC4SLC37A4: 119,023,751–119,030,906, reverse strandSLC37A4HYOU1: 119,044,185–119,057,252, reverse strandVPS11: 119,067,789–119,082,753, forward strandVPS11HMBS: 119,084,861–119,093,920, forward strandHMBSH2AX: 119,093,874–119,095,465, reverse strandH2AXDPAGT1: 119,095,979–119,108,331, reverse strandDPAGT1C2CD2L: 119,102,198–119,118,544, forward strandHINFP: 119,121,509–119,136,059, forward strandABCG4: 119,149,029–119,162,653, forward strandABCG4NLRX1: 119,166,481–119,184,017, forward strandNLRX1NHERF4: 119,185,457–119,190,227, forward strandNHERF4DRC12: 119,190,055–119,206,266, reverse strandDRC12CBL: 119,206,036–119,313,926, forward strandCBLMCAM: 119,307,972–119,321,521, reverse strandMCAMRNF26: 119,334,527–119,337,309, forward strandRNF26C1QTNF5: 119,338,942–119,340,940, reverse strandC1QTNF5MFRP: 119,338,942–119,346,705, reverse strandMFRPUSP2: 119,355,215–119,381,720, reverse strandUSP2THY1: 119,415,476–119,424,985, reverse strandTHY1Diagram of TRAPPC4: 5 exons on the forward strand of chromosome 11Exon 1: 1 known disease-causing siteExon 3: 1 known disease-causing siteExon 1: 119,018,766–119,018,970, 205 basesExon 2: 119,019,143–119,019,317, 175 basesExon 3: 119,020,150–119,020,253, 104 basesExon 4: 119,021,760–119,021,886, 127 basesExon 5: 119,023,321–119,024,134, 814 bases123455′3′

Exons of the gene's MANE Select transcript (release v1.5), from NCBI and EMBL-EBI, on the GRCh38 reference genome.

Chromosome bands from UCSC's GRCh38 ideogram (2022-10-29).

Nearby genes from Ensembl release 116, on GRCh38.

Exons make up 1.4 kb of the gene's 5.4 kb; 660 of those bases code for the protein.

How a genome test reads TRAPPC4

3

positions in TRAPPC4 where ClinVar classes a change as pathogenic or likely pathogenic

None of them falls in a region short reads find hard.

A whole genome covers all 5.4 kb of TRAPPC4, introns included, not only the 1.4 kb of exons.

Where this comes from

  • HGNC: the gene's symbol, name, other symbols and location.
  • MANE Select v1.5, from NCBI and EMBL-EBI: the transcript, its exons and coding sequence.
  • ClinVar and the GIAB stratifications: known disease-causing sites, and the regions short reads find hard.
  • The Human Phenotype Ontology, release 2026-09-01: the traits linked to the gene. Find out more at hpo.jax.org.
  • Data release 2026.10.16-c6eea6bf.

Cite this page

APA

Dante Labs. (n.d.). TRAPPC4 gene: trafficking protein particle complex subunit 4. Retrieved 17 October 2026, from https://dantelabs.com/genes/trappc4

Vancouver

Dante Labs. TRAPPC4 gene: trafficking protein particle complex subunit 4 [Internet]. [cited 17 October 2026]. Available from: https://dantelabs.com/genes/trappc4

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